Query= MSMg01no436_o19.b1 MSMg01no436_o19.b1 CHROMAT_FILE:
MSMg01no436_o19.b1 PHD_FILE: MSMg01no436_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:08 2005
(255 letters)
>mm_chr17_84966309_84966963
Length = 655
Score = 451 bits (233), Expect = e-131
Identities = 248/255 (97%), Gaps = 4/255 (1%)
Strand = Plus / Plus
Query: 1 attacggatgagagccttggggcgggggcagatgagcttttcaatgttagactttggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacggatgagagccttggggcgggggcagatgagcttttcaatgttagactttggaat 260
Query: 61 tagatttgttcactcaggcccaagctggagttaggggaagcgaggccaggggcccctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagatttgttcactcaggcccaagctggagttaggggaagcgaggccaggggcccctcta 320
Query: 121 actcatccattgtgaagacgcttgtttcctgttggagccgcccctctggtgctctgagag 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 321 actcatccattgtgaagacgcttgtttcctgttggagccgcccctctgttgctccgagag 380
Query: 181 aggaccggtgctgggctgtgcggccccaccacacagtggtgatgtgggtagatgtggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aggaccggtgctgggctgtgcggccccaccacacagtggtgatgtgggtggatgtggaga 440
Query: 241 gc----aggggtgtt 251
|| |||||||||
Sbjct: 441 gcgagcaggggtgtt 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space: 158916
Effective search space used: 158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no436_o19.g1 MSMg01no436_o19.g1 CHROMAT_FILE:
MSMg01no436_o19.g1 PHD_FILE: MSMg01no436_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:08 2005
(575 letters)
>mm_chr17_85151154_85152126
Length = 973
Score = 1017 bits (526), Expect = 0.0
Identities = 557/574 (97%), Gaps = 12/574 (2%)
Strand = Plus / Minus
Query: 2 aaatagtgtccctgcaagggatcttgtctgtctctgagatggtaaatctattcgccatcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aaatagtgtccctgcaagggatcttgtctgtctctgagatggtaaatctattcgccatcc 796
Query: 62 cagaagaacatgaacatctaggatgttcgcatatgatctaggagagagttgtgaactccc 121
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 795 cagaagaacatgaacatctagg----------atgatctaggagagagttgtgaactccc 746
Query: 122 cccctctgcagacctgagattaatatttaatatcccttggggcatttatgacagagagag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccctctgcagacctgagattaatatttaatatcccttggggcatttatgacagagagag 686
Query: 182 aagcaaggcacgcccagggctgagtgataagggctgtatttcctttccgtagtaaacttt 241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagcaaggcactcccagggctgagtgataagggctgtatttcctttccgtagtaaacttt 626
Query: 242 tgttcttcccatgtagacttctcaagttacctcatctgatttggaatcaacacttgagaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttcttcccatgtagacttctcaagttacctcatctgatttggaatcaacacttgagaa 566
Query: 302 actcaaagctgaaggccaacctgtaggatctgccctgaagcagctcctgctgctgctctg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actcaaagctgaaggccaacctgtaggatctgccctgaagcagctcctgctgctgctctg 506
Query: 362 ctcagaggaggtaaccctgacagtcctttccttttcacgcacgcgtgctttcacgtgctt 421
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 505 ctcagaggaggtaaccctgacagtcctttccttttcacgcgtgcgtgctttcgcgtgctt 446
Query: 422 tcggggtgagacactctatatagaccacagtaagtcaaaccaagtataatgtttatgaat 481
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcggggtgagacactctata--gaccacagtaagtcaaaccaagtataatgtttatgaat 388
Query: 482 tttacactttattattatgtgtcatgcttgagaacagttcaattaaatgaaaggctaact 541
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 tttacactttattattatgtgtcatgcttgagaacggttcaattaaatgaaaggctaact 328
Query: 542 aatttcagcgacaccttgaatgacatgttttcag 575
||||||||||||||||||||||||||||||||||
Sbjct: 327 aatttcagcgacaccttgaatgacatgttttcag 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 973
Length adjustment: 10
Effective length of query: 565
Effective length of database: 963
Effective search space: 544095
Effective search space used: 544095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
