Query= MSMg01no438_o15.b1 MSMg01no438_o15.b1 CHROMAT_FILE:
MSMg01no438_o15.b1 PHD_FILE: MSMg01no438_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:52 2005
(581 letters)
>mm_chr17_15055420_15056399
Length = 980
Score = 984 bits (509), Expect = 0.0
Identities = 563/581 (96%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 1 gcagtctcttatagcttgatagctttcttaaaaagatagatgaggaataaaagtttgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gcagtctcttatagcttgatagctttcttaaaaagatagatgaggaataaaagtttgggg 721
Query: 61 tagaaagccgatcacttgcatttgaggatgagtttatcattaaccaaacatggcacacgc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 720 tagaaagccgatcacttgcatttgaggatgagtttatcagtaaccaaacatggcacaggc 661
Query: 121 tcagactgctgggaccccctgtgttgcggaatctgaaggacggagctttacttctgctct 180
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 660 tcagactgctgggaccccctgtgctgcggaacctgaaggacggagctttacttctgctct 601
Query: 181 tccgggtcatccggcacctccgtttctcaaacatgtctctcaggctctgtgaggctcgcc 240
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 600 tccgggtcatccggcacctccgtttttcaaatatgtctctcaggctctgtgaggctcgcc 541
Query: 241 cctgtccttgtgtgtcaggagtctgtggagccctcctttctccgagtgtggtaggctccc 300
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 540 cccatccttgtgtgtcaggagtctgtggaaccctcctttctccgagtgtggtaggctccc 481
Query: 301 gtgatgctctctttccatctttgtgtcgggctccttatgaggctctcccttctctctgtg 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 gtgatgctctccttccatctttgtgtcgggctccttatgaggctctcccttctccctgtg 421
Query: 361 ccaatcacacatgtaccgggcacctagacacacggaggctcccgcaggctctcttcttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 ccaatcacacatgtaccgggcacctagacacacggaggctcccgcaggctctcctcttca 361
Query: 421 cgtgtgctccatcagtactgatttaatacctgacaagggtctagacagcctagagttctc 480
||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| ||||||
Sbjct: 360 cgtgtgcgccatcagtactgatttaacacctgacaagg-tctaaacagcctagcgttctc 302
Query: 481 ctctctagctctgtgttcttagtctctccctggaagaaaggtaggaatgcttacccacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctctctagctctgtgttcttagtctctccctggaagaaaggtaggaatgcttacccacac 242
Query: 541 ctcctcctgcccagcagccccatgctcttgtgtgtctccgt 581
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 ctcctcctgcccagcagccccatgctcttgtgtgcctccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_o15.g1 MSMg01no438_o15.g1 CHROMAT_FILE:
MSMg01no438_o15.g1 PHD_FILE: MSMg01no438_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:52 2005
(494 letters)
>mm_chr17_14921547_14922440
Length = 894
Score = 897 bits (464), Expect = 0.0
Identities = 493/516 (95%), Gaps = 22/516 (4%)
Strand = Plus / Plus
Query: 1 tcacctttgaacagactaacccagtgagtctcaccagccaccatgtgtactttgagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tcacctttgaacagactaacccagtgagtctcaccagccaccatgtgtactttgagaagc 238
Query: 61 catttctttccagaaaaaaaaaa--tgtattttgaattcaaggaccatcagcttgcagtg 118
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 239 catttctttccagaaaaaaaaaaaatgtattttgaattcaaggaccatcagcttgcagtg 298
Query: 119 aatgaaccagggtcttacttcatggtcacattttatacttgactgtagtgatgctttccc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aatgaaccagggtcttacttcatggtcacattttatacttgactgtagtgatgctttccc 358
Query: 179 ccatagacacactcgtgtgtgtgtgtgtgtgtgtgtgt--------------------ct 218
|||||||||||||||||||||||||||||||||||||| ||
Sbjct: 359 ccatagacacactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtct 418
Query: 219 atagcagacacggatggtattctgagcctgaagcagttataaggctctgcgtgtgcagta 278
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 419 atagcagacacggatggtattctgagcctgaagcagttataaggctctgtgtgtgcagta 478
Query: 279 caatcaagctgtgaacactgggccacctcacatctcttcaggggctcctaggtattttct 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caatcaagctgtgaacactgggccacctcacatctcttcaggggctcctaggtattttct 538
Query: 339 gagtaactcctttctgtgactgctccttttctctggtgccctgttcatggcatataaatg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gagtaactcctttctgtgactgctccttttctctggtgccctgttcatggcatataaatg 598
Query: 399 taatatcttcttatttcactagagataccaatggttcttctaccaccagtctctggacca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taatatcttcttatttcactagagataccaatggttcttctaccaccagtctctggacca 658
Query: 459 tctgtcctgtctctttctgtatttcaattttttcct 494
||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctgtcctgtctctttctgtatttcaattttttcct 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
