BAC Information

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BAC

Clone NameMSMg01-440M01
Chromosome17 (Build37)
Map Location 79,315,236 - 79,315,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik
Downstream geneCebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440M01.T7 (MSMg01no440_m01.b1)MSMg01-440M01.TJ (MSMg01no440_m01.g1)
ACCAG530794AG530795
length754945
length of high quality
(start - end)		473 (60 - 532)---
definitionCHROMAT_FILE: MSMg01no440_m01.b1 PHD_FILE: MSMg01no440_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:18 2005CHROMAT_FILE: MSMg01no440_m01.g1 PHD_FILE: MSMg01no440_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATGTTTTCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCCGCGGAATTCACATTTGATCCCAGGACACCATCTCCAAACTCTGCACA
TGGATCGTCTCTCCCACTCTAAACCCAAAATGTATCAGAACGGGAACAAC
CCATCGCCAGAGAGTGGCCAGAAAAGTGGGACCCTAAATTGGGATTTGCC
CTTTAGCCAGGTTCCTAGACAATTCCTTTACACATTAAAGGTGAGAAGCG
CTGTGCCTAGGTGCTGCCCAATAGTCAAGAAGAGGGCTGACCTAAGGGAA
GGAAAGATAGGAGATGGGGCATAGGAATGCCTAAAGAGGGACCACGTGCA
TGACAAAGCCTGGAATGTCAGACTATATCCACTTTTATTAAAATGCAGTC
TGTCCTCAGAGATCCACAGCCAGGGCTGCACGGAGAAACCCTGTCTCAAA
CAAGCAAACACAGGAAGCTATGAATGCTGCCCAACAAAACGTTCAAGGTA
AACATAATGGAAATTGGGGGAGGGGGAGTGGNTTGGNTTGNCTTATCTTA
TCTTGCCTTGGCTTGACTTGGCTTTTTGCTATATCTTACTGTGGCTTACC
TAAGTTCCTTCGTTTCTCTATATTCCATGTCTATTGTGTTCTCCCTCTTT
ACTTTTCTAATTTTTTTTAATATACCTCGTTTGTTGCCTACCTAAATCCA
ACATAATATTTTTCAATGAATTCATCTTCTGATACATATTCCTCTATCTT
TTCC

NNNNNNCCAACGAGATGGNTAGAGCATGGNCNNCCTCACGACGTCCCCNN
NNACGCTGGAGCTGCAGGCCTGTGCCCCCTCCCTTCTTCCTATGCTGTAA
GGGCTCACTGTACCTGCGCTTGCCTTCCGCCACGCACCCGCGCACATGCC
CACTAAACGGCTCGTTTGATGCCCCCCTGTGGATCGTGCCACCGCTCCCC
TGGAGGNTCTCGTTCTCCCGCAAACAATTCTTTAAGCGGGTGGGAACCAC
CCCTTAATTTTTTTAAAAGGGCGAATTCCCCGCCCGGGAGAAAAATTTTC
CCAGGNCCCACCCCCTTTTTTTTTTCCCCTAACCCTGGGAGAAAGAAAAC
ACCGGGCGCTTTTTAAAAAAATATTTTTCCCCTTGTGGGGGAACCACCAA
AAACAAAAAAAAAATATTGGGCGCCCAAATTTTTTTCTCTCCCCTTCTTC
TAATAAAAGGGGGCGCCCCCCCCCGCCGCCTTACAAAAAAAATATTTGGT
GGGACCCCACACAAAAAAAAACTCCCTCCACAAAAAAACAAACATAGATT
CTTTGTTTTTCTCTCTCCCTGGGGGGGGGGGGCCGCCCCCCCCCCCTCTA
ACTCTTTTTTTTTTCTTAAAAATTAAAAAAAAACACACCTTGGTGGGGCT
GCTCACAAAAAAAACCCACCCTCCCCGGGGGGGTGGGGGGGTCCCTCCTC
CCCCCCCTTTCCTTNCCCNTTNNTTTATACCNAACAAAAAATAAAAAAAA
AAAGAAGGGGGTGGGGCGTCCCCTTCCTATTTAACTCCCACTTCCTTCCC
CGCCCGTCCCCTCCCCTTCTTTTCCGCCGATTCTACAGTTTCCCTGCTTA
CCCGCACGTTCCATGACGGTCGGACTGCTTCCTGCGACCTTCTCTTTTTT
GTTTTCTCTGTGTTTTTTCCCTCACGCCGCCTGCTTTCTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_m01.b1 MSMg01no440_m01.b1 CHROMAT_FILE:
MSMg01no440_m01.b1 PHD_FILE: MSMg01no440_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:18 2005
         (473 letters)



>mm_chr17_79314969_79315841
          Length = 873

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacatttgatcccaggacaccatctccaaactctgcacatggatcgtctctcccactc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttcacatttgaacccaggacaccatctccaaactctgcacatggatcgtctctcccactc 680

                                                                       
Query: 61  taaacccaaaatgtatcagaacgggaacaacccatcgccagagagtggccagaaaagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taaacccaaaatgtatcagaacgggaacaacccatcgccagagagtggccagaaaagtgg 620

                                                                       
Query: 121 gaccctaaattgggatttgccctttagccaggttcctagacaattcctttacacattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaccctaaattgggatttgccctttagccaggttcctagacaattcctttacacattaaa 560

                                                                       
Query: 181 ggtgagaagcgctgtgcctaggtgctgcccaatagtcaagaagagggctgacctaaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggtgagaagcgctgtgcctaggtgctgcccaatagtcaagaagagggctgacctaaggga 500

                                                                       
Query: 241 aggaaagataggagatggggcataggaatgcctaaagagggaccacgtgcatgacaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggaaagataggagatggggcataggaatgcctaaagagggaccacgtgcatgacaaagc 440

                                                                       
Query: 301 ctggaatgtcagactatatccacttttattaaaatgcagtctgtcctcagagatccacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctggaatgtcagactatatccacttttattaaaatgcagtctgtcctcagagatccacag 380

                                                                       
Query: 361 ccagggctgcacggagaaaccctgtctcaaacaagcaaacacaggaagctatgaatgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccagggctgcacggagaaaccctgtctcaaacaagcaaacacaggaagctatgaatgctg 320

                                                               
Query: 421 cccaacaaaacgttcaaggtaaacataatggaaattgggggagggggagtgg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccaacaaaacgttcaaggtaaacataatggaaattgggggagggggagtgg 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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