NNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATC
CGCGGAATTCTCAACTGAGGAATACTGAGTGGCTGAAAAGCACCTAAAAA
AATGTTTAACATCCTTAGTCATGAGGGAATTGCAAATCAAAACAACCCTG
AGATTCCACCTCACATCAATCAGAATGGCTAAGATCAAAAATGCAGGTGA
CAGCAGATGCTGGCAACCATATGGAGAAAGAGGAACTCTCCTCCATTGCT
GGTAGGATTGCAAGCTGGTACAACCACTCTGTAAATCAGTTTGGCAGTTC
CTCAGAAAATTGGACTTAGTACATCCTGAGGACTCAGCAGTACCACTCCT
GGGCATCATCTGGGTATGATAATGCTCCAACATATAATAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATACTAACCAGAAGCTGGAAAGA
ACCCAGGTGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT
AGACAATGGAGTACTACTCAGCTATTNAAACAAGGATTTTATGAAATTCT
TAGGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGGCACCCCA
TCTCNAAGAACACACCTAATATGCCCTCCCTGATAATGGATATTAGCCCA
CAAGTCCAAATAACCCAGAAAATAATTGGACCATTTTTACTTAAGCCAAA
TTGAAGAAAATAACTAGGTTTCCAAAGCCTGGGAAAAAAGCAGGTTTTAT
GTAAAAAACTAAAGGTG

NNNNGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCATGAACTAAATGTTTC
TGTTTATCCTTAAAAAAATATCATTATAAATATATGTTTTATTTTAATGT
TTTAAATATAAAATTCAATGTACTTAGAAATATTATCAACAGAATCCATA
GGTAAATTCTACAGGGATGCTAAAGAAAAAAGAAAAAGTATTTCCATTAT
CATATTCAGACACAATGCTTTCTTTCACCTGAACAATATGACCCACATTA
TTTATATTCATAGGTACTACAAACTGTTAAGGTAGCTGTGGGCGTCCATA
AAACACTCAAAAATTAACTTCATTTTATATTACTGACTGTGTGCCAAGGC
ATCCAACAATATCAAAGACAAGTGGTTTGAGGAAGAAAGAGTATTGAACA
CATAGCCTCAGAATTAGCACAAGTAATATGTATCCATGCATGGAGTGAGA
TAATGATGAGAATCCAGGACCCCAAAATAGGATGCTTAGATATAAACATG
GTAAAACAATGGAGTATATTAGGAAGCAGACACTCCACCAACAGTTAAAG
AAATCATGCTGGGTAGACTGCATTTTTTAATCATATAGTATAAAACTTCC
AGTATTTTAGCCTGATTGTCTAGCTGCATAAAACCTTTTTGGATGAAACT
TACAGCTATTTTTAAAGAAATGGAAAAAAAACCCCTGTTTTTAAAAAAAA
GTATTTCCCAGGAATTTATCCTTGG

Query= MSMg01no440_p21.g1 MSMg01no440_p21.g1 CHROMAT_FILE:
MSMg01no440_p21.g1 PHD_FILE: MSMg01no440_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:37 2005
         (489 letters)



>mm_chr17_60676557_60677446
          Length = 890

 Score =  835 bits (432), Expect = 0.0
 Identities = 475/490 (96%), Gaps = 3/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcatgaactaaatgtttctgtttatccttaaaaaaatatcattataaatatatgttt 60
           |||||||||||||||||||||| ||||| |||  |||| |||||||||||||||||||||
Sbjct: 203 tattcatgaactaaatgtttctctttatactt--aaaactatcattataaatatatgttt 260

                                                                       
Query: 61  tattttaatgttttaaatataaaattcaatgtacttagaaatattatcaacagaatccat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttaatgttttaaatataaaattcaatgtacttagaaatattatcaacagaatccat 320

                                                                       
Query: 121 aggtaaattctacagggatgctaaag-aaaaaagaaaaagtatttccattatcatattca 179
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 321 aggtaaattctacagggatgctaaagaaaaaaagaaaaagtatttccatcatcatattca 380

                                                                       
Query: 180 gacacaatgctttctttcacctgaacaatatgacccacattatttatattcataggtact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gacacaatgctttctttcacctgaacaatatgacccacattatttatatccataggtact 440

                                                                       
Query: 240 acaaactgttaaggtagctgtgggcgtccataaaacactcaaaaattaacttcattttat 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaactgtgaaggtagctgtgggcgtccataaaacactcaaaaattaacttcattttat 500

                                                                       
Query: 300 attactgactgtgtgccaaggcatccaacaatatcaaagacaagtggtttgaggaagaaa 359
           |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct: 501 attactgactgtgtgccaaggcatccaacaattttaaagacaagtagtttgaggaagaaa 560

                                                                       
Query: 360 gagtattgaacacatagcctcagaattagcacaagtaatatgtatccatgcatggagtga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtattgaacacatagcctcagaattagcacaagtaatatgtatccatgcatggagtga 620

                                                                       
Query: 420 gataatgatgagaatccaggaccccaaaataggatgcttagatataaacatggtaaaaca 479
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 aataatgatgagaatccaggaccccacaataggatgcttagatataaacatggtaaaaca 680

                     
Query: 480 atggagtata 489
           ||||||||||
Sbjct: 681 atggagtata 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space:   421520
Effective search space used:   421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)