BAC Information

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BAC

Clone NameMSMg01-441I19
Chromosome17 (Build37)
Map Location 55,620,664 - 55,620,907
singlet/doubletsinglet
Overlap geneSt6gal2
Upstream geneLOC240117, EG629178, LOC100043833, LOC100043485, LOC677496
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441I19.T7 (MSMg01no441_i19.b1)MSMg01-441I19.TJ (MSMg01no441_i19.g1)
ACCAG531405AG531406
length770773
length of high quality
(start - end)
244 (67 - 310)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no441_i19.b1 PHD_FILE: MSMg01no441_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:22 2005CHROMAT_FILE: MSMg01no441_i19.g1 PHD_FILE: MSMg01no441_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAATACATCCGCGGAAT
TCTATTTTTTCGAAAAAAGTTGGAGAATAAAGTAGTTTGCCTGCTCATAT
CTGCTAGCAGTCCATCACAGTCTCAGCTCGTACATTTTATAGGCATCAAT
GGTAGGCCTGTCTAAGTTCTTCATGACCTACCTAGAATATATCAGAAGTC
CACCACTGTTAGTACTGAATAGAGCAATGCTGGGTGACTGTGGCCACAGG
CAAATACTGCAGGGTCCTTGCTGACTTCAGTGCCCTCAAGAATTGCCCTA
CCCTCTGCAAGTTTTATTGAACTAGAGCCACATAGTAAACCAAGAGGAAA
TACCAGCAGTTATCTTGTTGTGCTCCAGACCCTGCACTTAGCATTTGTTC
TGAGTTATCCCCTGATCTTTTTATCTCTGAATAAGACATAAAGCACTATT
ACATCCATTTCCAAATGAAGCAACAGGTCCACCGAGGTAAACCAATATGC
TCACAAACATGTCGAGCAAGCAATATTATGCTCAAACCCACTATGACCCC
AGGGCTCACTAAACTTGGAAGGCATCTGCTCATACCTGCTCATATCTGCT
TAAGGAAAGGTGTATTTTCTATATTTGGCTTATCTGCCTGCTGTTTATGG
ACATTTTTCCCCTTATTGCCACTCCCCGCTATACCCTTTTTTGTATCCCT
CCTGTTTAAACATGCCCAGCCTTGGTTCATTAATTGGTCATACCTCCTCC
ATGTCTTACCCTTTCCAGTG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TACTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCTCAAAGGAACTCACACAATATGTACTCTCTGATAAGTGG
ATATTATCTCCAAACCTAGGATACCCAAGATATATGAAACATTTCCTAAA
ACATGAAATTCTAAAAAATAGAAAATGGATGGGTGGACCCATGCCCCTCC
TTTAAAGGGGTTCAAAAATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_i19.b1 MSMg01no441_i19.b1 CHROMAT_FILE:
MSMg01no441_i19.b1 PHD_FILE: MSMg01no441_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:22 2005
         (244 letters)



>mm_chr17_55620464_55621107
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttggagaataaagtagtttgcctgctcatatctgctagcagtccatcacagtctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 aagttggagaataaagtagtttgcctgctcatatctgctagcagtccatcaaagtctcag 385

                                                                       
Query: 61  ctcgtacattttataggcatcaatggtaggcctgtctaagttcttcatgacctacctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcgtacattttataggcatcaatggtaggcctgtctaagttcttcatgacctacctaga 325

                                                                       
Query: 121 atatatcagaagtccaccactgttagtactgaatagagcaatgctgggtgactgtggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atatatcagaagtccaccactgttagtactgaatagagcaatgctgggtgactgtggcca 265

                                                                       
Query: 181 caggcaaatactgcagggtccttgctgacttcagtgccctcaagaattgccctaccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caggcaaatactgcagggtccttgctgacttcagtgccctcaagaattgccctaccctct 205

               
Query: 241 gcaa 244
           ||||
Sbjct: 204 gcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)