BAC Information

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BAC

Clone NameMSMg01-441P18
Chromosome17 (Build37)
Map Location 52,272,438 - 52,272,945
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441P18.T7 (MSMg01no441_p18.b1)MSMg01-441P18.TJ (MSMg01no441_p18.g1)
ACCAG531739AG531740
length777790
length of high quality
(start - end)		508 (67 - 574)478 (72 - 549)
definitionCHROMAT_FILE: MSMg01no441_p18.b1 PHD_FILE: MSMg01no441_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:58 2005CHROMAT_FILE: MSMg01no441_p18.g1 PHD_FILE: MSMg01no441_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTCATTCTCACCCAATGTCAGCAACTCCCTTGGAGGTCTTTGCCCT
TGTAGCTGGGTGACATGGAGTCACCATCAAGAAGAACTTAATACCTTCAA
AGTGGAAGGCACTTGGGGGCAGTGGTTGATGAAGAAAGGATGTTGTCTGT
TCCGTGGTCCATGCCCAGCTTAGATCTCAGATGGCAAGAAATGAACTTTA
TTACATGAAGCCACCAAGTTTTGGAATAATTATCTCCCTGACACCAGCTT
TCCTGGCTCAACCCCATTCTTTTCTGTTTCCTTCTCCATCCAAGCAAAGT
AGAACATAGGATACAAGCCATAAGAAAGTTCATGCAACAGCCATGGCTTT
CCTTTTCCTCTTTGTTTCCTTGTAGACAAGTAACTGGCTGTGCTGAGCAC
CACAGGGAGAGCAAGGGAATGTATCAAAAGACCACAGAATGCTTATTCCA
TAAGCAATGGATAATAACAACAATAACAGTAATACCATTAATGGCAATAA
TAATCAACATTAATCTTTCTTCAGCAGGTCTTGAATGGCATTCAGCGGCC
CAAGGCCCATTATGACTCCAGCATGAATAGGCCCTGCTGTGGGTCTTTTT
TTAACGAAATAGTTCTGTTGTTGCCCGTAACCCAACCCCCTGTTTTGTTT
ATCCTATACCATAACCCCCTCTCCCCCTGTTTTCCTAAAGAATCCCCGTC
ACCCCCTTCTTTATTTCTTTTTCTTTA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGTCCTAATTTTTAA
TGGGGTTATTTGATTTCCTGGAGTCCTACTTCTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCCATCTGATTTAGAATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCA
CAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTC
GAGGGGTTTCCCTACTTTCTCCTCTATAAGTTTCGGGGTGTCTGGTTTTA
TGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGAGAGG
AATGGGTCGATTCGCATTCTTCTACATGAAAACAACCAGTTGTGCCAGCA
CCATTTGTTGAAAATGCCGTCTTTTTTCCACTGGATGGTTTTAGCTCCCT
TGTCAAAGATCAAGTGACCATAGATGTGTGGATTCCTTTCTGGGGCTTCA
ATTCTATTCCATTTGCCTACTTGGCTGCCCCTATACCAGTATCCTGGGGT
TTTTTTTTTTATTACAATGCTCCGGAGAACACCTTTTAGGCCCGTTTTGG
TTTCTCCCCCCAACGTCTCTTTTTATTTTGAAAAATTTTTTGTTCCCCCC
CTTTTTTTTGTTTTTTATAAAAAATTGTTCATATCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_p18.b1 MSMg01no441_p18.b1 CHROMAT_FILE:
MSMg01no441_p18.b1 PHD_FILE: MSMg01no441_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:58 2005
         (508 letters)



>mm_chr17_52272238_52273145
          Length = 908

 Score =  982 bits (508), Expect = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgtcagcaactcccttggaggtctttgcccttgtagctgggtgacatggagtcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgtcagcaactcccttggaggtctttgcccttgtagctgggtgacatggagtcacca 260

                                                                       
Query: 61  tcaagaagaacttaataccttcaaagtggaaggcacttgggggcagtggttgatgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagaagaacttaataccttcaaagtggaaggcacttgggggcagtggttgatgaagaa 320

                                                                       
Query: 121 aggatgttgtctgttccgtggtccatgcccagcttagatctcagatggcaagaaatgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatgttgtctgttccgtggtccatgcccagcttagatctcagatggcaagaaatgaac 380

                                                                       
Query: 181 tttattacatgaagccaccaagttttggaataattatctccctgacaccagctttcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattacatgaagccaccaagttttggaataattatctccctgacaccagctttcctgg 440

                                                                       
Query: 241 ctcaaccccattcttttctgtttccttctccatccaagcaaagtagaacataggatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaaccccattcttttctgtttccttctccatccaagcaaagtagaacataggatacaa 500

                                                                       
Query: 301 gccataagaaagttcatgcaacagccatggctttccttttcctctttgtttccttgtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccataagaaagttcatgcaacagccatggctttccttttcctctttgtttccttgtaga 560

                                                                       
Query: 361 caagtaactggctgtgctgagcaccacagggagagcaagggaatgtatcaaaagaccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagtaactggctgtgctgagcaccacagggagagcaagggaatgtatcaaaagaccaca 620

                                                                       
Query: 421 gaatgcttattccataagcaatggataataacaacaataacagtaataccattaatggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatgcttattccataagcaatggataataacaacaataacagtaataccattaatggca 680

                                       
Query: 481 ataataatcaacattaatctttcttcag 508
           ||||||||||||||||||||||||||||
Sbjct: 681 ataataatcaacattaatctttcttcag 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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