BAC Information

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BAC

Clone NameMSMg01-442D02
Chromosome17 (Build37)
Map Location 51,917,589 - 51,917,962
singlet/doubletsinglet
Overlap geneSatb1
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneEG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442D02.T7 (MSMg01no442_d02.b1)MSMg01-442D02.TJ (MSMg01no442_d02.g1)
ACCAG531896AG531897
length803786
length of high quality
(start - end)
379 (51 - 429)238 (79 - 316)
definitionCHROMAT_FILE: MSMg01no442_d02.b1 PHD_FILE: MSMg01no442_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:15 2005CHROMAT_FILE: MSMg01no442_d02.g1 PHD_FILE: MSMg01no442_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGTTTACGTGGTCCCTTTTCCCAGGTGATATAGGTCAGA
TATAGTGCAGTCTTGCCAGGGAAGGTTAAGGTCATTAGTATTAATTTCTT
ATGACTGACTGATCCAGACATCATTACCAACAATCTAGCATACTAAAGAA
ACAGTACGGAAAGACCACACACCCTGTCACATTACAGTACCAGCTGAGGT
ACCCAATTAAAGTACAGCCAATCTGTGTCCCATAGGTGCTTCAATAAAGT
CACTGAACTAAATTAGGTAAAATCAGTAATCTTGTTTCTAAAAAGAAGTG
AAACAAAAGACGTGCATGTTATGAAGGGGGTTCCCAACACGTCACAAATA
TTATTCTCACTAGAAATAAGAATCTGGTGTTCACTGGGTGGTCAGATCGT
ACAAATAATCAGATTTGTGTTGTATGTATGACAACATATAATTATTCTAC
TCTGTCATTTACTTATTGGTTAATTGAGAGCCCTGACGCTTTTCATTTTT
AGACTACTTTTATTGATAACTTTCCTCAACCTTTTTTTTTTTACCTTTTT
ACCACGCGCTTTCCTAGCTTATTTACAACTTAATTTCCACTTACCGGATT
GTACCCCCCATAATATTTTTTTCCCCTATTTCTTTTATATTATCCCACTC
CAAATAGTCTCATCAATAAGACTTCTTTTGACCCCCCTCTGTACTCTTTT
TTTCCCCCTGCCTTGGTCTCACTCCCTTACCACATATTCTTCTTCACCCT
CTN
TCTCGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTTCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTTATATTAGCC
AGAATCTGGACAGAACCTATATGCCCCTCAACAGATGAATGGATATCGAT
AATGCGGTACATCTATCTTATGCATCACCATTCTCTTATTACCTAGAATG
TAATTTTGATATTCCTATCCCTTTGTATTGTTCCCCGTTGCCCATTCTCC
TCGTATTGCCTTACTTTTTTTTCTTTATTCCTCCCTTCCTTTCTTCCCCT
CACTGTTCTTTTTTTTATTTTATCTTCCTCCCCCCCATTTTAGATCTACT
TTAATATTTTTATTTTTTTCCTACCTCCCCGCTTCGTTCCTTTTTTATTC
TTTATTCTCATCCCTTTTTACACACTTATATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_d02.b1 MSMg01no442_d02.b1 CHROMAT_FILE:
MSMg01no442_d02.b1 PHD_FILE: MSMg01no442_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:15 2005
         (379 letters)



>mm_chr17_51917386_51918164
          Length = 779

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagtgtttacgtggtcccttttcccaggtgatataggtcagatatagtgcagtct 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagtgtctatgtggtcccttttcccaggtgatataggtcagatatagtgcagtct 263

                                                                       
Query: 64  tgccagggaaggttaaggtcattagtattaatttcttatgactgactgatccagacatca 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 tgccagggaaggttaaggtcattagtattaatttctcatgactgactgatccagacatca 323

                                                                       
Query: 124 ttaccaacaatctagcatactaaagaaacagtacggaaagaccacacaccctgtcacatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaccaacaatctagcatactaaagaaacagtacggaaagaccacacaccctgtcacatt 383

                                                                       
Query: 184 acagtaccagctgaggtacccaattaaagtacagccaatctgtgtcccataggtgcttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagtaccagctgaggtacccaattaaagtacagccaatctgtgtcccataggtgcttca 443

                                                                       
Query: 244 ataaagtcactgaactaaattaggtaaaatcagtaatcttgtttctaaaaagaagtgaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaagtcactgaactaaattaggtaaaatcagtaatcttgtttctaaaaagaagtgaaa 503

                                                                       
Query: 304 caaaagacgtgcatgttatgaagggggttcccaacacgtcacaaatattattctcactag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaaagacgtgcatgttatgaagggggttcccaacacgtcacaaatattattctcactag 563

                         
Query: 364 aaataagaatctgg 377
           ||||||||||||||
Sbjct: 564 aaataagaatctgg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)