BAC Information

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BAC

Clone NameMSMg01-442J20
Chromosome17 (Build37)
Map Location 5,600,466 - 5,600,753
singlet/doubletsinglet
Overlap geneZdhhc14
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312
Downstream gene3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442J20.T7 (MSMg01no442_j20.b1)MSMg01-442J20.TJ (MSMg01no442_j20.g1)
ACCAG532219AG532220
length813780
length of high quality
(start - end)
287 (75 - 361)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no442_j20.b1 PHD_FILE: MSMg01no442_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:51 2005CHROMAT_FILE: MSMg01no442_j20.g1 PHD_FILE: MSMg01no442_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAAAACATCCGC
GGAATCCATACTTTTACAATTGACTGGAAGAGATAAGGAGGGGAGGGGCC
AGAAGACAGCTGCACCTTGACACCCTAAGAATGGCATTTTATTTGCTGAG
TTCACACAAGTCTGCCAAACAATGCTGACAAGTGAGCCCTGTTTTCAAAA
ACAAACGTATGAAGACATTTCAAACATTTATCAAGTACCAACGTGCCACA
CCTAATATGAAGGGCTAACCTCACAAGCATAAAAACGAGTGTGAACTTTT
AGCATTTTTTAAAGTTCCCTGTTTCCTCNTTTTTGAAAAATTAAACAAAA
AAACAGCATAATTTGTTACTGGAACCCACGCCAGAAGCTACACACATTAT
GTCAACTCGCTGACAACACATCTACTAAATAAAAAGTGAGTATTGCTAAT
TCAACCATTTCTATACTACGTTCTAATTGTCTCCCCACGTTTTATAATGC
CAAAATGTATATTGGTTATCCTTTTTATGCATCCATTTTTCTTTCCTTAT
CACTTTTTTTATACCCTATTCTTTCTCAACTCCTTCTCCCCCCCTTTTTT
TTTCTTCCACTTTTCTCCTCCTCCTCTTTTTTCTTTCTCTTTTTTTTTCT
TTTATAACTTTTTATTTTTTACCCCCCCTTTTCACTTCTCTCCCTTCTTC
TTCTTACTCCTCCTTCCTTTATATTACATTTTCCGTATTTTCTTTATTAC
CTCTTTTTCTTAATCTTCTCCCCCTTGTTATATCCTATCATTACTTTTTC
TATCTCCCCCTCG
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGC
TGAGAAGCACCTGAGAAAATGTTCAGCATCCTTAATCATCAGGGAAATGC
AAATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGCTGGTGGGATTGCAAACTTGTACAACCATTCTGGA
AATCAGTCTGGCGGTTCCTCAGAATTATTGTACATAGTACTACCAGAGGA
TTCCGCAATACCTCTCTTGGGCATATATCCAGAAGATGTTCCAACTGGCA
AGAAAGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATGGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAA
AATGTGGTACATTTACCCTACGGAGTATTACTCCGCTACTTAAAAGAATG
AATTTATGAAATGCCTAGGTAATGGTCGGATCTGGGAGTCCCTCTTCTCG
TGTTGGCCACTCTTCCCCTTCTGTTTTCTTCTTTGGTACGTACCCCTCGG
ACACCCGTCTTTATTTTTTTTTTGATTTCTCCCCCCCCCACCTGATTTTC
TCGCTGTTTTTATAATATTATCACCGCTCCTTTCTTCCTATATTCTTTCT
TTCCCCCCCCCTCTTTTTCTTTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_j20.b1 MSMg01no442_j20.b1 CHROMAT_FILE:
MSMg01no442_j20.b1 PHD_FILE: MSMg01no442_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:51 2005
         (287 letters)



>mm_chr17_5600266_5600953
          Length = 688

 Score =  497 bits (257), Expect = e-145
 Identities = 281/289 (97%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaagagataaggaggggaggggccagaagacagctgcaccttgacaccctaagaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tggaagagataaggaggggaggggccagaagacagctgcaccttgacaccctaagaatgg 429

                                                                       
Query: 61  cattttatttgctgagttcacacaagtctgccaaacaatgctgacaagtgagccctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cattttatttgctgagttcacacaagtctgccaaacaatgctgacaagtgagccctgttt 369

                                                                       
Query: 121 tc-aaaaacaaacgtatgaagacatttcaaacatttatcaagtaccaacgtgccacacct 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaaaaaacaaacgtatgaagacatttcaaacatttatcaagtaccaacgtgccacacct 309

                                                                       
Query: 180 aatatgaagggctaacctcacaagcataaaaacgagtgtgaacttttagcattttttaaa 239
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaaatgaagggctaacctcacaagcataaaaacgagtgtgaacttttagcattttttaaa 249

                                                            
Query: 240 gttccctgtttcctcnt-ttttgaaaaattaaacaaaaaaacagcataa 287
           ||||| |||  |||| | ||||||||||||||| |||||||||||||||
Sbjct: 248 gttccttgtaacctc-tcttttgaaaaattaaataaaaaaacagcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)