BAC Information

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BAC

Clone NameMSMg01-442K12
Chromosome17 (Build37)
Map Location 50,596,802 - 50,597,043
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K12.T7 (MSMg01no442_k12.b1)MSMg01-442K12.TJ (MSMg01no442_k12.g1)
ACCAG532249AG532250
length794787
length of high quality
(start - end)
235 (81 - 315)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no442_k12.b1 PHD_FILE: MSMg01no442_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:55 2005CHROMAT_FILE: MSMg01no442_k12.g1 PHD_FILE: MSMg01no442_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTAACGCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGA
TCCGCGGAATTCACCTCTTACAACCTCTTTCATTATGTACCACAAATTTG
GGCATGTTGTATATTCAGTTTAATTCAATTCTAAAAAGTCTAATTTTTCT
TTATTTCTGTCTTGGCCCACTTTTATTCAGAAAAGAGTTGTTCATTTTTC
ATGAGTTTGCAAATTTTCTTGTTTCTGTAGTTGTTGATTTTGAACTTTAA
TGTAGTGGTCTGATAAGGTGTAGGGAGTTATTTCAATCTTTTTTTGCATT
TATTAGACCTGCTTTGCGTCCAATTTTTTTTTTTTATTTTGGAGAAAGTT
CCATGAGGCATGGAGATGATTGTCCTGCACATATCTGTTACGCCCCTTTG
CTTTATTATGCGGGTTTTCTTCCCCCTCTTCTTTGTCTTAATACATATTT
GGATAATCTCTCTGTAGTTTTTACGTTCTTATCTCTCCTTTTTTTCTGTT
CTTCTAATGATGCTTATTTACACCTTCTTTTCCTTTATGATCCCTTTTCC
TCATAATCCTATCCTATTTCTCCTTCCGACTTTTTTTTTTTTCATCTTTT
TTTGTTTCTCTTTCTCCTTCTTTTATTGTTTCAACCCCAACTCTCCTTTC
TCTCCCTTTCTTTTATCCATCACCTTTTTATCATCACATTTCTCTCCTCT
ATCCTTTTGTTTTTTTTATTTCCATCAAGAATGTTTATTTTTTATTTCCC
CCCCCCTCTTTGATTTTTTCTGCCTCAATTTTATTTCTGCCTTT
NCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAATAATAAATACTTAGCA
CAGGCCAGTGCCCACACAGTGGTACTTAACCCTAGATTCTGTTCTGGGTG
AGTGGGGAGAGGAAGGGCAGATGGCAGCAATGATCAGACTCGGGATGCAA
CCCCCAGACTAACCTGTCTGCTCACAGCCCCCTGGGACTCTTGAGCCCAC
ACTAGGATCCGAGAGACAGCGCCCAGCCCTTCTTACAGGCATCCAGTCAC
AGGGCATCTGACAGAGCCTGGTTTTATCTTTTGACCTTGCGGGCCTCAGA
CTGGCTGCTGAGTTTCTACCACCTTTAGAAAGAGGGGCGGTGATTTGAGA
CTACCATTAGCTTCTGTCCCGCCCGCTTCTCCTGACACCCCCGATTCGTC
CCCGCTCCCGCCCTTTCTCTACTCCTCTTCTTCCCTCGTTATTTAGATCT
CCCTTTCCCCCTCTCTCTTCCCGCCCCCCATTCTTTTGCCCCCCTACTTA
CTTTCCCACTGACAGCTATAGCCCCCCCCATTTTCCTTCCCCTCCCCCTC
ATCCTATCCTCTTTCCCTCCTCCCTCCTCTTCTTTACTATTCCTCTTCCC
CCTCACCCCTCCTCCCCCCCCCCCCACGCCTTTTTTTTTTTTTCCCACCT
CCGCTTTGCCCCCCCCCACCCCCTCTTTTTCTCCTCACCCCCCTTCTCCC
TCCTCCCTCTTATCCTCTCCCCTGCACCCTGCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k12.g1 MSMg01no442_k12.g1 CHROMAT_FILE:
MSMg01no442_k12.g1 PHD_FILE: MSMg01no442_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:55 2005
         (242 letters)



>mm_chr17_50596602_50597243
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaataataaatacttagcacaggccagtgcccacacagtggtacttaaccctagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cataaataataaatacttagcacaggccagtgcccacacagtggtacttaaccctagatt 383

                                                                       
Query: 61  ctgttctgggtgagtggggagaggaagggcagatggcagcaatgatcagactcgggatgc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgttctgggtgagtggggaaaggaagggcagatggcagcaatgatcagactcgggatgc 323

                                                                       
Query: 121 aacccccagactaacctgtctgctcacagccccctgggactcttgagcccacactaggat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 322 aacccccagactaacctgtctgctcacagccccctgggactcttgagcccacaccaggac 263

                                                                       
Query: 181 ccgagagacagcgcccagcccttcttacaggcatccagtcacagggcatctgacagagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccgagagacagcgcccagcccttcttacaggcatccagtcacagggcatctgacagagcc 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)