MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-442M06
Chromosome	17 (Build37)
Map Location	57,440,456 - 57,440,698
singlet/doublet	singlet
Overlap gene	Vav1
Upstream gene	Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635
Downstream gene	Emr1, EG224916, Cntnap5c, LOC674419
Link	Open Mouse BAC browser

Click to get alignment info.

name	Uhrf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18140 MGI:1338889
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Jmjd2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:193796 MGI:2442355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptprs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19280 MGI:97815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668592 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668592 MGI:3645726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Znrf4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20834 MGI:1341258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Safb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224902 MGI:2146808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Safb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224903 MGI:2146974
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 108 ESTs, 2 Proteins

name	2410015M20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224904 MGI:2442174
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54217 MGI:1860603
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lonp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74142 MGI:1921392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619718 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Tmem146 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106757 MGI:2147030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs, 1 Protein

name	Ranbp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71810 MGI:1919060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccpn-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12456 MGI:109504
definition	note : calcyphosine, pseudogene pseudo : _no_value

name	AI662250 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106639 MGI:2146912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufa11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69875 MGI:1917125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 177 ESTs, 3 Proteins

name	Fut4-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14346 MGI:104647
definition	note : fucosyltransferase 4, pseudogene 1 pseudo : _no_value

name	Nrtn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18188 MGI:108417
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dus3l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224907 MGI:2147092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm546 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224908 MGI:2685392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein

name	Rfx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19725 MGI:106583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acsbg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328845 MGI:3587728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700061G19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78625 MGI:1925875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mllt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64144 MGI:1927238
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asah3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171168 MGI:2181962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clpp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53895 MGI:1858213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alkbh7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66400 MGI:1913650
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pspn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19197 MGI:1201684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtf2f1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98053 MGI:1923848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Khsrp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16549 MGI:1336214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a41 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103775 MGI:2144215
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66972 MGI:1914222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224912 MGI:2670904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dennd1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70785 MGI:1918035
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tubb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22153 MGI:107848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfsf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21950 MGI:1101058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd70 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21948 MGI:1195273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfsf14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50930 MGI:1355317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12266 MGI:88227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr108 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78308 MGI:1925558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trip10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106628 MGI:2146901
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668635 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668635
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Vav1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22324 MGI:98923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Emr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13733 MGI:106912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG224916 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224916 MGI:3644483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins

name	Cntnap5c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620292 MGI:3646013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC674419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1405 ESTs, 12 Proteins

name	Uhrf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981595 GeneID:18140 MGI:1338889
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-like, containing PHD and RING finger domains, 1 transcript_id : NM_010931.2

name	Jmjd2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26006856 GeneID:193796 MGI:2442355
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : jumonji domain containing 2B transcript_id : NM_172132.1

name	Ptprs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:25092608 GeneID:19280 MGI:97815
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, S transcript_id : NM_011218.1

name	EG668592 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402067 GeneID:668592 MGI:3645726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG668592 transcript_id : XM_001002503.1

name	Znrf4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113205050 GeneID:20834 MGI:1341258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc and ring finger 4 transcript_id : NM_011483.2

name	Safb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71533180 GeneID:224902 MGI:2146808
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : scaffold attachment factor B2 transcript_id : NM_001029979.1

name	Safb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268768 GeneID:224903 MGI:2146974
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 108 ESTs, 2 Proteins product : scaffold attachment factor B transcript_id : XM_001480312.1

name	2410015M20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348236 GeneID:224904 MGI:2442174
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410015M20 gene transcript_id : NM_153152.3

name	Rpl36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802572 GeneID:54217 MGI:1860603
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L36 transcript_id : NM_018730.2

name	Lonp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089321 GeneID:74142 MGI:1921392
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lon peptidase 1, mitochondrial transcript_id : NM_028782.2

name	LOC619718 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94402075 GeneID:619718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC619718 transcript_id : XM_884088.2

name	Tmem146 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268770 GeneID:106757 MGI:2147030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs, 1 Protein product : transmembrane protein 146 transcript_id : XM_001052082.2

name	Ranbp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117676380 GeneID:71810 MGI:1919060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 3 transcript_id : NM_027933.2

name	AI662250 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341929 GeneID:106639 MGI:2146912
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI662250 transcript_id : NM_178926.2

name	Ndufa11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268881 GeneID:69875 MGI:1917125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 177 ESTs, 3 Proteins product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11, transcript variant 3 transcript_id : XM_895878.3

name	Nrtn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130662 GeneID:18188 MGI:108417
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurturin transcript_id : NM_008738.2

name	Dus3l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450076 GeneID:224907 MGI:2147092
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dihydrouridine synthase 3-like (S. cerevisiae) transcript_id : NM_144858.1

name	Gm546 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402080 GeneID:224908 MGI:2685392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein product : gene model 546, (NCBI) transcript_id : XM_148801.5

name	Rfx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677730 GeneID:19725 MGI:106583
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X, 2 (influences HLA class II expression) transcript_id : NM_009056.1

name	Acsbg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84993735 GeneID:328845 MGI:3587728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase bubblegum family member 2 transcript_id : NM_001039114.1

name	1700061G19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117935033 GeneID:78625 MGI:1925875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700061G19 gene transcript_id : NM_030141.1

name	Mllt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981230 GeneID:64144 MGI:1927238
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid/lymphoid or mixed lineage-leukemia translocation to 1 homolog (Drosophila) transcript_id : NM_022328.2

name	Asah3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802077 GeneID:171168 MGI:2181962
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acylsphingosine amidohydrolase (alkaline ceramidase) 3 transcript_id : NM_175731.3

name	Clpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8393155 GeneID:53895 MGI:1858213
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) transcript_id : NM_017393.1

name	Alkbh7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381110 GeneID:66400 MGI:1913650
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alkB, alkylation repair homolog 7 (E. coli) transcript_id : NM_025538.2

name	Pspn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679510 GeneID:19197 MGI:1201684
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : persephin transcript_id : NM_008954.1

name	Gtf2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130859 GeneID:98053 MGI:1923848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor IIF, polypeptide 1 transcript_id : NM_133801.2

name	Khsrp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51492006 GeneID:16549 MGI:1336214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KH-type splicing regulatory protein transcript_id : NM_010613.2

name	Slc25a41 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347984 GeneID:103775 MGI:2144215
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25, member 41 transcript_id : NM_175333.3

name	Slc25a23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70980533 GeneID:66972 MGI:1914222
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 transcript_id : NM_025877.3

name	Crb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130453 GeneID:224912 MGI:2670904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crumbs homolog 3 (Drosophila) transcript_id : NM_177638.4

name	Dennd1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24025655 GeneID:70785 MGI:1918035
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 1C transcript_id : NM_153551.1

name	Tubb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981938 GeneID:22153 MGI:107848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, beta 4 transcript_id : NM_009451.3

name	Tnfsf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803209 GeneID:21950 MGI:1101058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 9 transcript_id : NM_009404.3

name	Cd70 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892213 GeneID:21948 MGI:1195273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD70 antigen transcript_id : NM_011617.2

name	Tnfsf14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892635 GeneID:50930 MGI:1355317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 14 transcript_id : NM_019418.2

name	C3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126518316 GeneID:12266 MGI:88227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 3 transcript_id : NM_009778.2

name	Gpr108 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130680 GeneID:78308 MGI:1925558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 108 transcript_id : NM_030084.3

name	Trip10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353957 GeneID:106628 MGI:2146901
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone receptor interactor 10 transcript_id : NM_134125.2

name	Vav1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802217 GeneID:22324 MGI:98923
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vav 1 oncogene transcript_id : NM_011691.3

name	Emr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368838 GeneID:13733 MGI:106912
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EGF-like module containing, mucin-like, hormone receptor-like sequence 1 transcript_id : NM_010130.2

name	EG224916 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268772 GeneID:224916 MGI:3644483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins product : predicted gene, EG224916 transcript_id : XM_140062.7

name	Cntnap5c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126116575 GeneID:620292 MGI:3646013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : contactin associated protein-like 5C transcript_id : NM_001081653.1

name	LOC674419 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268883 GeneID:674419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1405 ESTs, 12 Proteins product : similar to ribosomal protein L7a transcript_id : XM_001481160.1

name	Uhrf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981596 CCDS:CCDS28903.1 GeneID:18140 MGI:1338889
definition	GO_component : GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0008283 - cell proliferation [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006464 - protein modification [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : nuclear protein 95 product : ubiquitin-like, containing PHD and RING finger domains, 1 protein_id : NP_035061.2

name	Jmjd2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26006857 CCDS:CCDS28904.1 GeneID:193796 MGI:2442355
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : jumonji domain containing 2B protein_id : NP_742144.1

name	Ptprs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25092609 GeneID:19280 MGI:97815
definition	GO_component : GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007185 - transmembrane receptor protein tyrosine phosphatase signaling pathway [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : tissue-specific protein tyrosine phosphatase product : protein tyrosine phosphatase, receptor type, S protein_id : NP_035348.1

name	EG668592 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402068 GeneID:668592 MGI:3645726
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001002503.1

name	Znrf4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113205051 CCDS:CCDS28906.1 GeneID:20834 MGI:1341258
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : sperizin; spermatid specific RING zinc finger 1 product : zinc and ring finger 4 protein_id : NP_035613.2

name	Safb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71533181 CCDS:CCDS28907.1 GeneID:224902 MGI:2146808
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : scaffold attachment factor B2 protein_id : NP_001025150.1

name	Safb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268769 GeneID:224903 MGI:2146974
definition	codon_start : 1 product : scaffold attachment factor B protein_id : XP_001480362.1

name	2410015M20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346595 CCDS:CCDS28908.1 GeneID:224904 MGI:2442174
definition	codon_start : 1 product : hypothetical protein LOC224904 protein_id : NP_694792.1

name	Rpl36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055322 GeneID:54217 MGI:1860603
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : ribosomal protein L36 protein_id : NP_061200.1

name	Lonp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089322 CCDS:CCDS28910.1 GeneID:74142 MGI:1921392
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006510 - ATP-dependent proteolysis [Evidence IEA] codon_start : 1 product : protease, serine, 15 protein_id : NP_083058.2

name	LOC619718 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82994361 GeneID:619718
definition	codon_start : 1 product : hypothetical protein protein_id : XP_889181.1

name	Tmem146 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268771 GeneID:106757 MGI:2147030
definition	codon_start : 1 product : hypothetical protein LOC106757 protein_id : XP_001052082.2

name	Ranbp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83523744 CCDS:CCDS28911.1 GeneID:71810 MGI:1919060
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0046907 - intracellular transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAN binding protein 3 protein_id : NP_082209.1

name	AI662250 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725792 CCDS:CCDS28912.1 GeneID:106639 MGI:2146912
definition	GO_function : GO:0019215 - intermediate filament binding [Evidence ISS] codon_start : 1 product : vimentin-type IF-associated coiled-coil protein protein_id : NP_849257.1

name	Ndufa11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268882 GeneID:69875 MGI:1917125
definition	codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11 isoform 3 protein_id : XP_900971.2

name	Nrtn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679136 CCDS:CCDS28913.1 GeneID:18188 MGI:108417
definition	GO_function : GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0021675 - nerve development [Evidence IMP]; GO:0001755 - neural crest cell migration [Evidence ISS]; GO:0031175 - neurite development [Evidence ISS] codon_start : 1 product : neurturin protein_id : NP_032764.1

name	Dus3l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450077 CCDS:CCDS28914.1 GeneID:224907 MGI:2147092
definition	GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : putative zinc finger protein MA23 product : dihydrouridine synthase 3-like protein_id : NP_659107.1

name	Gm546 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402081 GeneID:224908 MGI:2685392
definition	codon_start : 1 product : hypothetical protein protein_id : XP_148801.5

name	Rfx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677731 CCDS:CCDS28915.1 GeneID:19725 MGI:106583
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : regulatory factor X, 2 (influences HLA class II expression) protein_id : NP_033082.1

name	Acsbg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84993736 CCDS:CCDS28916.1 GeneID:328845 MGI:3587728
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : acyl-CoA synthetase bubblegum family member 2 protein_id : NP_001034203.1

name	1700061G19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117935034 GeneID:78625 MGI:1925875
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC78625 protein_id : NP_084417.1

name	Mllt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11612511 CCDS:CCDS28918.1 GeneID:64144 MGI:1927238
definition	codon_start : 1 note : trithorax; leukemia-associated protein MLLT1; myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog product : myeloid/lymphoid or mixed lineage-leukemia translocation to 1 homolog protein_id : NP_071723.1

name	Asah3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28376625 CCDS:CCDS28919.1 GeneID:171168 MGI:2181962
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0000139 - Golgi membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0017040 - ceramidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA] GO_process : GO:0046514 - ceramide catabolism [Evidence IDA]; GO:0006672 - ceramide metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0019216 - regulation of lipid metabolism [Evidence IDA]; GO:0006665 - sphingolipid metabolism [Evidence IDA] codon_start : 1 note : alkaline ceramidase product : N-acylsphingosine amidohydrolase 3 protein_id : NP_783858.1

name	Clpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393156 CCDS:CCDS28920.1 GeneID:53895 MGI:1858213
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008462 - endopeptidase Clp activity [Evidence ISS] [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006515 - misfolded or incompletely synthesized protein catabolism [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : caseinolytic protease, ATP-dependent, proteolytic subunit homolog protein_id : NP_059089.1

name	Alkbh7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313470 CCDS:CCDS28921.1 GeneID:66400 MGI:1913650
definition	codon_start : 1 product : spermatogenesis associated 11 protein_id : NP_079814.1

name	Pspn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679511 CCDS:CCDS28922.1 GeneID:19197 MGI:1201684
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0008083 - growth factor activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence TAS] GO_process : GO:0001658 - ureteric bud branching [Evidence IDA] codon_start : 1 exception : mismatches in translation product : persephin protein_id : NP_032980.1

name	Gtf2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270031 GeneID:98053 MGI:1923848
definition	GO_function : GO:0016563 - transcriptional activator activity [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : general transcription factor IIF polypeptide 1 (74kD subunit) product : general transcription factor IIF, polypeptide 1 protein_id : NP_598562.1

name	Khsrp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51492007 GeneID:16549 MGI:1336214
definition	codon_start : 1 product : KH-type splicing regulatory protein protein_id : NP_034743.2

name	Slc25a41 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425020 GeneID:103775 MGI:2144215
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 25, member 41 protein_id : NP_780542.1

name	Slc25a23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49274632 CCDS:CCDS28923.1 GeneID:66972 MGI:1914222
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 25, member 23 protein_id : NP_080153.2

name	Crb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244038 CCDS:CCDS28924.1 GeneID:224912 MGI:2670904
definition	GO_component : GO:0016324 - apical plasma membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0045198 - establishment of epithelial cell polarity [Evidence ISS]; GO:0045216 - intercellular junction assembly and maintenance [Evidence ISS] codon_start : 1 product : crumbs homolog 3 protein_id : NP_808306.1

name	Dennd1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24025656 GeneID:70785 MGI:1918035
definition	codon_start : 1 product : DENN/MADD domain containing 1C protein_id : NP_705779.1

name	Tubb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981939 CCDS:CCDS28925.1 GeneID:22153 MGI:107848
definition	GO_component : GO:0005929 - cilium [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA]; GO:0051258 - protein polymerization [Evidence IEA] codon_start : 1 product : tubulin, beta 4 protein_id : NP_033477.2

name	Tnfsf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678389 CCDS:CCDS28926.1 GeneID:21950 MGI:1101058
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : 4-1BB ligand product : tumor necrosis factor (ligand) superfamily, member 9 protein_id : NP_033430.1

name	Cd70 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755839 CCDS:CCDS28927.1 GeneID:21948 MGI:1195273
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : Ki-24 antigen product : tumor necrosis factor (ligand) superfamily, member 7 protein_id : NP_035747.1

name	Tnfsf14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507195 CCDS:CCDS28928.1 GeneID:50930 MGI:1355317
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0043027 - caspase inhibitor activity [Evidence ISS]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0050798 - activated T cell proliferation [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0008588 - release of cytoplasmic sequestered NF-kappaB [Evidence ISS]; GO:0007165 - signal transduction [Evidence ISS]; GO:0043029 - T cell homeostasis [Evidence ISS] codon_start : 1 product : tumor necrosis factor ligand superfamily, member 14 protein_id : NP_062291.1

name	C3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126518317 GeneID:12266 MGI:88227
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006957 - complement activation, alternative pathway [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0050766 - positive regulation of phagocytosis [Evidence IMP]; GO:0001798 - positive regulation of type IIa hypersensitivity [Evidence IMP] codon_start : 1 note : complement factor 3; acylation stimulating protein product : complement component 3 protein_id : NP_033908.2

name	Gpr108 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29150274 CCDS:CCDS28929.1 GeneID:78308 MGI:1925558
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 108 protein_id : NP_084360.2

name	Trip10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527354 CCDS:CCDS28930.1 GeneID:106628 MGI:2146901
definition	GO_component : GO:0005874 - microtubule [Evidence TAS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : Cdc42 interacting protein-4 product : thyroid hormone receptor interactor 10 protein_id : NP_598886.1

name	Vav1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981440 CCDS:CCDS28931.1 GeneID:22324 MGI:98923
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0030676 - Rac guanyl-nucleotide exchange factor activity [Evidence IGI]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IGI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IMP]; GO:0007229 - integrin-mediated signaling pathway [Evidence IGI]; GO:0007242 - intracellular signaling cascade [Evidence IMP]; GO:0006909 - phagocytosis [Evidence IGI]; GO:0045785 - positive regulation of cell adhesion [Evidence IGI]; GO:0043087 - regulation of GTPase activity [Evidence IGI]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; GO:0042110 - T cell activation [Evidence IMP]; GO:0030217 - T cell differentiation [Evidence TAS] codon_start : 1 exception : mismatches in translation note : vav oncogene product : vav 1 oncogene protein_id : NP_035821.2

name	Emr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859546 GeneID:13733 MGI:106912
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : lymphocyte antigen 71; cell surface glycoprotein F4/80 product : EGF-like module containing, mucin-like, hormone receptor-like sequence 1 protein_id : NP_034260.1

name	EG224916 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268773 GeneID:224916 MGI:3644483
definition	codon_start : 1 product : similar to putative pheromone receptor protein_id : XP_140062.7

name	Cntnap5c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126116576 GeneID:620292 MGI:3646013
definition	GO_function : GO:0031177 - phosphopantetheine binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : contactin associated protein-like 5-3 product : contactin associated protein-like 5C protein_id : NP_001075122.1

name	LOC674419 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268884 GeneID:674419
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481210.1

name	LOC668635 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668635
definition	number : 5 pseudo : _no_value

name	LOC668635 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668635
definition	number : 4 pseudo : _no_value

name	LOC668635 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668635
definition	number : 3 pseudo : _no_value

name	LOC668635 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668635
definition	number : 2 pseudo : _no_value

name	LOC668635 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668635
definition	number : 1 pseudo : _no_value

clone name	MSMg01-328B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516F05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-232P22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-177G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263H23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-526J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433H16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-069N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342G22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-278F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530E02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-322A13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-386J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077C02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-442M06.T7 (MSMg01no442_m06.b1)	MSMg01-442M06.TJ (MSMg01no442_m06.g1)
ACC	AG532332	AG532333
length	846	802
length of high quality (start - end)	64 (85 - 148)	244 (80 - 323)
definition	CHROMAT_FILE: MSMg01no442_m06.b1 PHD_FILE: MSMg01no442_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:05 2005	CHROMAT_FILE: MSMg01no442_m06.g1 PHD_FILE: MSMg01no442_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:05 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTCTCCTCTTAATGTGCGGCCGCTATGCGAGTCACTATTCCAAGAGGATC CGCGGAATTCATTGTTTTTCTAATATATTTTCCATTTTTTATTAGGTATT TAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCC ACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTTTTCCC CTGGACTGTGGCGTATACCGCTTGCGCGTCCAATGGGTCTCTCTTTCCAG TGACGGCCGATTTTGTCATTTTCTGGGACTTATGTTGCTTGTGTTATTAT CTCCGGTGTACTGGGAAGCCCCCATTTTTTTTTTTCCGAACCCTCTGCTC ACCGCGTTAGCGCCTTTTTTTTTTTTTTTCCGTTCTTTGTTTGGATGCCG TGCCGCTTCCATCCATTACTCGCCCCGTTTTTTCCCCCCTCCCTCTGTTT TTTATGGCCCCCTTTCTTACCTTTTTTCTTTATCTTTTTTTTCCCTCTTT TTTCCCCGCCCTTCTTTCCCTCTTCTATATGTGCTCTTTTTTCCCCCCCC CTCCACCTTGTTATCTCCTGTTACCTTTCTTTTACCCTCCTCTTCTCCCC CTTCTTTTCTCTCTCTTTTGTTTTTTCCTTTCTCTCCTCCCCTCCCTCAC ATCTTTTTTTTTTTTATTTGTCTGTACTCCCCTTCTCCGACCCTTTTTGT TTCCCCTCTCCTTTTCTTCTCACTCTCTCTCCGCCTGTTCTCCTTTTCTG TTCTTATTCCTCACCGACCCCCTACTTTTCCTTTTCTTTTTTCTCACCTC CCTACTTTCTTTTTTCTCCCCTCTCTCCTTTTTCTTCTCCCCCCTT	GGTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTCATGCTGGTATGGT AAGCACCTCACAAACTGAGCCCTTGTACTTAGTCAAATCCATTTGCCCCT CCTCCCCTGCCTCCTGTCCTCCTCCTGCCCTGTGCCATATGTGTTTCCCA TGATGCTCCTATTTTCCACCCTGCCAGGAATGTTCTCAAAGAGCTAACAA TGGCCGATTCACCCTGCGGGATCTGCTGATGGTGCCTATGCAGCGGGTGC TGAAGTACCACCTCCTTCTCCATTTTTCTTTCACACGGCTGGGTCCCCTT GGGTGTGGCTGGCTGATACCCTACCCTCCATTTTGTTGCTGCAGTAAAAA CATACAAGGTAAAAGCAACTATATAGTAGAAAGCGCGTGCCTGGGAAGCC CAGGCCAGTAAATTACCCCCTTAGTCTTCACCCTTAATTTGCTCATCCAA CTGAAACGCACGTTCGTTCTTTTTTTGCCTGCATTTTTTTTTCTCTCTTA TCTGATCCCTACCTTTAATATTTGTTCCCTTTACTTTATTTCCCATCCTT CTTCTTTTTCCCCCTCTTTATTCTCTCTTTCTCTCCATCTTTTCTTTTTT CTTACTACCCTTTCACCTATAACTCATAATCNCACCCCTTTTTTTTCTTC TTCCCACCTTTTGCTTTCTTTTCCCCCCTCCCCCCCCCTTATTCTTCCTC CCCCCTTTTCTCCTCCTCACTCTTATCTTTATCTTCCTTCTTTCTCCTCT CC
quality values	Open. Hide. 8 10 10 19 15 9 8 8 11 8 8 8 10 10 9 11 10 10 10 10 10 11 10 8 8 8 8 8 8 13 12 14 9 9 8 7 6 6 9 7 6 6 8 8 11 17 11 14 14 19 25 41 39 50 35 31 31 28 33 33 28 27 22 23 21 11 13 12 10 9 9 10 10 8 8 8 8 10 13 22 12 14 9 12 13 20 39 39 39 35 35 37 37 26 32 37 39 48 59 57 57 57 57 48 48 47 42 42 48 42 42 37 42 41 42 43 42 36 39 37 37 41 48 48 47 47 37 37 30 28 28 32 37 39 37 37 43 39 39 37 36 30 27 15 12 12 12 12 16 13 17 20 21 28 23 15 15 12 12 14 18 21 23 23 20 20 19 20 12 11 11 11 20 24 24 12 13 13 18 18 20 19 15 13 13 26 15 23 22 30 22 17 10 10 11 12 16 20 32 34 28 26 12 12 12 10 12 9 9 10 10 10 8 8 8 11 11 11 11 11 11 11 17 11 11 11 11 12 12 12 12 12 21 21 19 10 10 10 10 17 12 12 12 15 15 12 12 9 8 8 8 8 8 8 12 11 9 9 10 10 10 10 10 10 10 10 10 10 10 10 13 10 10 10 8 8 8 8 8 9 12 15 12 12 9 9 9 10 10 10 10 9 9 10 10 10 10 8 8 8 8 8 8 8 12 8 8 9 9 9 10 10 13 16 12 11 11 9 9 9 9 8 8 9 9 9 13 16 31 30 30 18 15 11 6 6 8 8 11 11 10 9 9 8 10 10 10 10 8 8 8 8 8 8 12 11 11 8 10 7 7 8 8 11 12 16 12 12 21 19 17 17 22 17 17 15 9 13 8 8 8 8 8 10 10 10 10 8 6 6 8 8 11 8 8 6 6 8 8 8 8 10 8 8 10 10 10 10 10 8 6 8 8 8 8 8 8 8 6 6 8 8 8 8 13 8 8 8 13 10 23 23 21 16 19 15 10 9 11 12 9 11 8 8 8 6 6 8 8 15 16 8 8 8 9 9 9 10 26 22 20 19 14 13 13 10 10 9 6 6 6 6 8 8 10 9 11 11 11 10 10 10 8 10 8 10 10 16 24 13 15 10 8 8 8 12 7 6 8 8 8 8 8 11 10 11 8 8 8 8 8 8 10 10 8 8 8 8 12 12 14 14 14 15 15 19 13 9 9 9 11 11 11 10 10 10 10 10 10 10 13 19 13 14 18 19 15 14 8 8 8 8 8 8 8 9 9 11 11 8 8 8 8 8 8 12 12 8 8 8 8 8 9 9 8 8 8 10 10 10 10 8 9 8 9 9 9 9 12 8 8 7 7 8 10 10 10 13 15 15 15 11 11 11 11 8 11 10 8 8 8 8 8 8 8 14 10 10 11 11 11 11 12 12 18 18 25 24 20 13 8 8 8 8 10 10 13 15 15 17 11 10 10 8 8 8 10 8 8 8 8 8 8 10 14 16 14 14 14 19 19 19 22 10 8 8 8 8 6 6 8 8 8 8 6 6 8 10 10 10 10 10 11 10 10 8 10 8 8 8 8 11 15 20 18 14 13 8 8 8 13 13 11 13 8 8 13 10 8 8 8 8 8 8 8 8 7 6 6 8 8 8 8 8 8 8 9 9 11 10 11 6 6 8 8 6 6 8 8 10 8 8 8 8 10 11 8 8 9 6 6 7 7 12 6 8 8 9 10 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 12 8 10 10 15 12 9 9 10 9 12 8 8 8 8 10 13 8 7 7 10 15 10 8 8 8 8 8 10 10 8 8 8 12 19 19 13 13 8 8 8 8 9 10 13 16 16 16 10 10 10 10 9 9 9 8 8 9 8 8 8 8 8 8 8 14 13 10 10	Open. Hide. 7 10 10 6 6 6 6 8 10 10 9 9 10 8 8 8 8 8 8 8 8 8 15 27 27 39 37 31 31 31 37 18 19 17 13 8 9 8 8 8 10 10 16 17 24 31 23 27 24 37 37 44 36 36 36 33 33 33 37 37 23 27 9 18 10 9 9 9 15 16 23 29 17 14 16 27 31 35 32 36 36 36 47 53 53 57 57 57 57 57 59 59 59 57 57 53 68 68 68 68 68 68 57 57 57 54 50 50 47 47 50 50 50 51 68 68 48 48 43 43 44 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 54 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 68 59 59 59 59 57 57 57 57 57 57 57 59 59 59 68 68 68 59 59 57 57 54 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 59 57 57 59 59 59 57 57 57 59 57 68 68 68 68 68 44 44 28 22 30 30 42 42 33 30 42 44 57 57 57 57 57 68 57 57 57 48 57 59 59 57 57 57 57 54 43 44 43 43 43 46 59 59 59 57 54 48 59 59 59 59 59 42 47 48 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 46 41 36 23 23 23 12 12 9 8 8 8 6 8 8 9 10 27 30 41 46 59 59 59 59 47 47 46 30 31 43 46 37 41 30 35 35 35 39 34 30 20 20 15 19 10 10 9 10 10 11 11 11 18 23 25 14 15 15 15 23 23 28 37 37 43 59 43 48 43 43 43 37 37 21 21 14 14 14 15 15 28 23 24 28 28 22 20 11 11 10 10 8 8 8 8 8 10 10 8 8 8 8 10 10 10 8 6 6 10 10 8 8 9 16 8 8 8 8 10 10 12 10 8 8 8 8 8 9 9 11 11 10 12 12 10 10 10 11 11 9 10 10 8 8 8 8 8 8 9 9 9 10 10 10 11 11 9 8 8 8 6 6 8 8 13 14 12 8 8 6 6 8 8 10 10 10 10 11 13 12 10 8 8 10 7 9 9 9 9 9 9 9 10 10 10 9 9 8 8 8 10 10 8 8 8 15 15 17 10 10 10 8 8 8 9 10 11 15 10 10 12 10 8 8 12 10 10 12 8 10 10 8 9 9 9 9 9 11 21 10 10 8 8 8 8 8 11 13 12 12 10 10 12 10 10 10 10 10 10 10 9 9 9 9 10 10 10 11 12 10 10 10 11 8 8 8 8 8 8 8 7 7 8 8 14 12 12 18 10 9 10 10 9 9 9 11 11 12 18 18 15 11 10 10 10 10 9 10 9 10 10 10 10 10 10 10 8 8 8 6 6 8 8 9 9 8 10 10 15 18 15 14 14 11 10 9 9 8 8 8 10 10 9 9 9 8 8 6 6 8 6 9 11 11 11 10 10 9 9 9 13 9 10 3 0 3 6 8 8 10 10 10 8 15 26 30 31 16 14 10 10 9 10 8 8 8 8 8 8 8 8 10 10 13 8 8 8 13 13 8 8 8 10 9 9 10 11 11 30 16 15 10 10 10 10 11 11 13 15 15 8 8 8 8 10 10 10 10 8 8 8 8 8 13 19 23 19 15 15 19 19 13 13 10 12 12 14 12 12 9 9 8 8 8 8 8 8 8 8 8 8 15 8 8 6 6 8 10 12 8 8 8 10 12 8 11 13 19 18 21 8 8 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no442_m06.g1 MSMg01no442_m06.g1 CHROMAT_FILE:
MSMg01no442_m06.g1 PHD_FILE: MSMg01no442_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:05 2005
         (244 letters)



>mm_chr17_57440256_57440899
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcctcatgctggtatggtaagcacctcacaaactgagcccttgtacttagtcaaatc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agttcctcatgctggtatggtaagcacctcacaaactgagtccttgtacttagtcaaatc 260

                                                                       
Query: 61  catttgcccctcctcccctgcctcctgtcctcctcctgccctgtgccatatgtgtttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttgcccctcctcccctgcctcctgtcctcctcctgccctgtgccatatgtgtttccc 320

                                                                       
Query: 121 atgatgctcctattttccaccctgccaggaatgttctcaaagagctaacaatggccgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatgctcctattttccaccctgccaggaatgttctcaaagagctaacaatggccgatt 380

                                                                       
Query: 181 caccctgcgggatctgctgatggtgcctatgcagcgggtgctgaagtaccacctccttct 240
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 caccctacgggatctgctgatggtacctatgcagcgggtgctgaagtaccacctccttct 440

              
Query: 241 cca 243
           |||
Sbjct: 441 cca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information