BAC Information

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BAC

Clone NameMSMg01-443A08
Chromosome17 (Build37)
Map Location 56,607,117 - 56,607,357
singlet/doubletsinglet
Overlap genePtprs
Upstream geneSt6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Downstream geneEG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A08.T7 (MSMg01no443_a08.b1)MSMg01-443A08.TJ (MSMg01no443_a08.g1)
ACCAG532527AG532528
length722754
length of high quality
(start - end)
250 (77 - 326)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no443_a08.b1 PHD_FILE: MSMg01no443_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:28 2005CHROMAT_FILE: MSMg01no443_a08.g1 PHD_FILE: MSMg01no443_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GGGCGCGGAATCAGCCTGATTTCCCTGACACTGTCTCAGAGAGACAGGGG
GAGAGAGAGAGACAGAGAGATGAGGGGGAGAGAATGATAGAGAAAGTGCA
CATGAGCACTCATTCCAGCACTCAGGAGGTATAGGCTGGAGGATCAGGGG
TTCAAAGCCATCCTCAGCCACCTAGTGGGTCTGAGGCTAGCCTGGGCTAC
ATGAGACCCTGTATTGAAAGCAAAGAAAAAAATGAAGAGCTGGATCTAGG
AGTTTAATCTCCAGCATTCAGAGGACTTTATTTTGGGATCTCTGTGAGTT
CCATACTAGCCTAGACTACATACCAAGACTTTGTCTCNATTAATTTAAAA
AAAAAGAATATTCCCAGAGAGAGGAATGAACAATGGATGGAGGGAGATCT
CCTAATTCCCCCCCCATTTAGCTCCTTCCAGACCTCTGTTAGGTCTGCCC
CATTATCCCCGGTATTCCCTGTTTCCCCCTGAAACCTTTAAGTTCTCCTT
TTTTCGTGCATTCCTCGTTTTCTCTTTCCCCATTTTCCTTCTTGTCGTTC
CTTTCCCAACCACNCATAACCAATATAGTGATANTATTTATTNGCTGTCC
CCCTTTCCCTCCCCCTTTTTCGGTACCCATCTTATTGGGTGCGTCTCTTT
TTGGCGGTTTTCTCTTATTCCC
TTCCTCGATGCAGTTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGAAATCAGAACAGCACCTGGGTCCCACAGACTA
GCTGGGGAACTCTGGTCTGCTTGAGTTGGCCAGAGGCTACACAGCACACA
CACAGCACCGCTCCCTGGCCCCCTGGGCTGCCAAATCTGGCTTGTTGGTT
TCCAGACTCCCCTGGCTCCAGGCCTGCCCTCATCCCACCTCCTTCAGTCT
GTTCCCAGGCCCATGCCAGCTGGCCCCGCTGGCCAGTGCTGCTTGGTGGG
CACCCCCCCCCCCGCATTTAATATTTTATTCTTCTGCCCCCTCCCTCTGT
ATTTCCCGATAATGATTGCAAAGAGGTAGGGAGGGAGGGAGTCCTTTNTT
TTTTTCCCCCTTATTCTCCCCCCCCCCCTTTTTCCACTTTTTTTTCTACC
CTTTCCCTCCTTTCCCCTTCCCCTTTTTTTTTCCTCCCTCTATCTCCTTT
CTTATCTCCCATTACCCCCCCCCCTTTTTCCCCTTTATTCTTTTCCCCCC
CCCTTTTTTTTTTTTTCCCCTTTTTCTCTCTTCACCCTTACTTTATTTCC
CTATCCCCCCCCATGCCAATTCTTTTTTTTTCTTCTCCCCCCTTTCTTCT
TTTTTTCCTTTCCCTCCACATTTTCTCTCTTCTATTTCCTCCTCCTCTAT
TCTTACTTTTCTTATTCTCCCTTCCCCCCCATTCTTTTTCTCCCTTTCTA
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a08.g1 MSMg01no443_a08.g1 CHROMAT_FILE:
MSMg01no443_a08.g1 PHD_FILE: MSMg01no443_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:29 2005
         (243 letters)



>mm_chr17_56606917_56607558
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagcacctgggtcccacagactagctggggaactctggtctgcttgagttggccagag 60
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 441 aacagcacctgggtcccacagactggctggggaactctgggctgcttgagttggccagag 382

                                                                       
Query: 61  gctacacagcacacacacagcaccgctccctggccccctgggctgccaaatctggcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacacagcacacacacagcaccgctccctggccccctgggctgccaaatctggcttgt 322

                                                                       
Query: 121 tggtttccagactcccctggctccaggcctgccctcatcccacctccttcagtctgttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 tggtttccagactcccctggctccaggcctgccctcatcccacctccttcagtctgcacc 262

                                                                       
Query: 181 caggcccatgccagctggccccgctggccagtgctgcttggtgggcacccccccccccgc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 261 caggcccatgccagctggccccgctggccagggctgcttggtgggcacccccccccc-gc 203

             
Query: 241 at 242
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)