BAC Information

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BAC

Clone NameMSMg01-443C23
Chromosome17 (Build37)
Map Location 14,520,673 - 14,521,146
singlet/doubletsinglet
Overlap geneSmoc2
Upstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneLOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C23.T7 (MSMg01no443_c23.b1)MSMg01-443C23.TJ (MSMg01no443_c23.g1)
ACCAG532652AG532653
length7491,308
length of high quality
(start - end)
474 (70 - 543)---
definitionCHROMAT_FILE: MSMg01no443_c23.b1 PHD_FILE: MSMg01no443_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005CHROMAT_FILE: MSMg01no443_c23.g1 PHD_FILE: MSMg01no443_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATATTTGCGGCGCTAAACGACTCCTATATTTCGAAATCCGCGGAAT
TCTCTCTGGATGTCACACATCCTATTTCCTGCCTCAGCTCATTGGCCATA
CGCATTTTTATTGGCAGGTGACGCTTATAAGAGATTGTTTTTTCTATCAG
AGCTGGTGCCTATAGCTGCAGGTGGAAGAGTTTCTGGGAAGCACTCGTGT
GTCCTTCAGTGAAGACAGTGTTTCCTCCGCCTCTGAGGTCGTGGCTGTAG
GAATCTGGCAAAGTCTAGGCATGAGGTGGAGATTCCTGGAAGCCACTCTT
GGCCTGTGTATTCTGAGGTCTTTTTTGAAGCACCCAGTAGGACCAGTTTC
AGGTTCTCACCACTGTTTTCACACAAGCTCTCATGCTTGAAGTGTCCTTT
TAAGTACCAAAGCAAGAGTCTGTGGGGAGTCTTAAGCAGACAGAAGTCAC
ACCTAGTGCTCAGACACACTTTAAAGGCCGGAAGCTTCCGGAATCAGACT
TTGCCCGGCTGAGGAACTTGGGTTACTCCCTTGGGGCTGAGAAGTGAGTA
ATCACAGTTTATCAAAACAATCATTCAGATGCATTGTGGAGCATGATCGT
GTATACCTGGAGGCAGGGGAACTCTGTCAGGCTGCACAGAGCCCCGGATC
AGTTCCTAGTTTTCCGAAGAGCTGATTGGTAATCCACAAAAATCCTATCT
TACATCTTGCTTGTGCCCTGCCCGCCCCTGGGGTAAAAATTACATCGCG
AGATATATAAATACGCCCACTGCGTAGCATTAGTTATCCTGCCGCATATT
AATCTGTTTCCAGACGAGAAAGGGAATATATACGCGGAAGGAGAGTATAT
AATCACATATAAAACAACGCGGTGCCGCCTAATAATATAACAACTCCCCC
GCCTGATTGAGAGATAGGTGTTAAACACTGCGCCCCGCTACCCGCCACGT
GCGACCGCGCCCCGTTATTCACGTAGTGGTGTGCCGTGCGCGCGACGCGA
AGACGACCCAAGATGAGGACAACCCGACGAAAAGTCACAGCCCCGCTGAG
GAGGGAGACATACCGGTTCGCCGGCTAACTGGCCCCACGAGCTACTGCAC
CCTTCGCCTGATGGAATCGCCCGACAGCGGTTACCGTTGTGTGGCCGCCC
GCACCCAGAACGTGCTTAATATTATGTCGAGACCGCGGTAAACGCGCGGG
CGCTATTTAACCAGCGCCATCACAATTGAACCTATTCCGGCTGTTTCTTA
ACCGCCGCTCCGCCGCAGATTACACTGGGCGCATACGGGAAATACGGCCA
TCATGTCCCTCCAGAGCGGAATAGCGATTGTCACCATCTTTTGTCTCGGG
GCAGTCGTAGAGGGCGGGGCAGCCTGGCCCCACGGTTATACCACCCGCCT
ATCTCGTGTTGCCACNACCTTGGGCTGTATGACAGAATACACCCTAAACC
GCAGGCGACAGTTGGGCGTGGAGGACCAGTCACACGCGGGGTGTTGTAGG
TTTTCGCGCCACCAGCCCGCGTGCGAACCGGATGTTGGGGGGCAGAAGTT
ATGAATAGTTAACAGACCAGGGTGTATTACACGAGTGTTGAAAGCGCCCA
CGGGGCATGTGAGCGGAGGTTACAGTTATACCGCGCCATGCCCGTCGGGG
CGGGGAGGGCGGATCTAGAGAGGTGTGTAATTTCGCGCCTGAATTANAAG
GGCGGAGAGGAGGGAGTTGGTGGAGCGAAAAATGAAGACAAAAGCACGCA
CGTCGCAAATAGGAGGTGGGGCCGTGCCACGACCAGTGCAGACCAGCTAG
TAACCCGAGAACGACCCAGATACAACGCAGCCGCTAATAGAGAGACACCG
AGCCGAACGGCTGAGGTGCAGGAACGAGTGATAACTTATTTACGGCGGCG
GCGCAGCCACGGTCGTTATCTGCGGCGCAGCGCCGCCACGTGCTTTGTGC
GATTGTAGATGAGCGTCCCGCACTTTAATCAGCGCGCTTNGTTGCGCCGC
CTATGATAGTGAGAGATAACCGCTCGTGGATATAGAACCCGCGGCGATAT
ATATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c23.b1 MSMg01no443_c23.b1 CHROMAT_FILE:
MSMg01no443_c23.b1 PHD_FILE: MSMg01no443_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:42 2005
         (474 letters)



>mm_chr17_14520473_14521346
          Length = 874

 Score =  816 bits (422), Expect = 0.0
 Identities = 461/478 (96%), Gaps = 8/478 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctatttcctgcctcagctcattggccatacgcatttttattggcaggtgacgcttata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcctatttcctgcctcagctcattggccatacgcatttttattggcaggtgatgcttata 260

                                                                       
Query: 61  agagattgttttttctatcagagctggtgcctatagctgcaggtggaagagtttctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagattgttttttctatcagagctggtgcctatagctgcaggtggaagagtttctggga 320

                                                                       
Query: 121 agcactcgtgtgtccttcagtgaagacagtgtttcctccgcctctgaggtcgtggctgta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 agcactcgtgtgtccttcagtgaagacagtgtttcctccgcctctgagatcgtggctgta 380

                                                                       
Query: 181 ggaatctggcaaagtctaggcatgaggtggagattcctggaagccactcttggcctgtgt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatttggcaaagtctaggcatgaggtggagattcctggaagccactcttggcctgtgt 440

                                                                       
Query: 241 attctgaggtctttttt----gaagcacccagtaggaccagtttcaggttctcaccactg 296
           ||||||||| |||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctgaggcctt----cccagaagcacccagtaggaccagtttcaggttctcaccactg 496

                                                                       
Query: 297 ttttcacacaagctctcatgcttgaagtgtccttttaagtaccaaagcaagagtctgtgg 356
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 497 ttttcacacaagctctcatgcttggagtgaccttttaagtaccaaagcaagagtctgtgg 556

                                                                       
Query: 357 ggagtcttaagcagacagaagtcacacctagtgctcagacacactttaaaggccggaagc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |
Sbjct: 557 ggagtcttaagcagacagaagtcacacctagtgctcagacacactttaaaggtgggaatc 616

                                                                     
Query: 417 ttccggaatcagactttgcccggctgaggaacttgggttactcccttggggctgagaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttccggaatcagactttgcccggctgaggaacttgggttactcccttggggctgagaa 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)