BAC Information

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BAC

Clone NameMSMg01-443F22
Chromosome17 (Build37)
Map Location 87,166,511 - 87,166,963
singlet/doubletsinglet
Overlap geneEpas1
Upstream geneLOC100043903, Srbd1, LOC545228, Prkce
Downstream gene1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F22.T7 (MSMg01no443_f22.b1)MSMg01-443F22.TJ (MSMg01no443_f22.g1)
ACCAG532792AG532793
length716763
length of high quality
(start - end)
453 (85 - 537)313 (82 - 394)
definitionCHROMAT_FILE: MSMg01no443_f22.b1 PHD_FILE: MSMg01no443_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:57 2005CHROMAT_FILE: MSMg01no443_f22.g1 PHD_FILE: MSMg01no443_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAAATCCACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
AATCCGCGGAATTCATTCGCTTTCCAAACACGTCAGAATGACCACAAGCC
TCCTGTGTTTCTTCGCTTTCGGGTTTTGCCAGATTCTAAATGCCGTCAGG
GCCACTGGCTCTTGTTTTATGTCCCTGGCAAAGCTGGCCTTCCCATGAAG
TTCAAAGCCGCTTTCAGGCATCTTGGGAGTCTGGGAGACTGCTTTCGCTT
GCTCTCTGCTTTGTGCGGACCTAGGTTGGAGATGTCACCTCTGTCTGCTG
CTCTCTGAATACGAACCAGGGAATGTTCTATTAAGACCACGTGCTTTAAA
TGTATATTTTAAAAGCACACTTTGTGAGTATTATCTTAATGGAAAGAACT
TTGAAAAGTATAAAGTGCAAACCTTCTAGGCATTGTCATTAAGGAGCAGA
GCAATATACTCATTAGGTGTGTTATTACCTCTTAAAAGTGAACCGCCTGC
AGACAGGAGGAAGCCTTGAGAGAGGCTAACAGGAGGCTCTGGTCTCCAGG
CTCCTACCGGAGGGCCCCTCCGCCTGTGCTTTTGGGACCTGTGTATTCTT
GNCCATCCCGGCTTTTAATGGATATTCCCACATTGAAGAAATCTGAATAA
AAGTCCTGACAACACCCAAATCCCCGCTCCCCTTCCGCTTGCTTTGGTTC
CCCCTCTCCCGCCGAA
TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTGACAATACAGAAAA
TATTTAGAATTACATTTCAAGGGCCCATATAATTCCCCCAAAGTACTTAA
ACCCTCATTAAAACTTTTTCTTATTTATTTTTTGCGTATTGGTGTTTTGT
CTGTCTGTAGGGTGTATGTGTACTTGGTGCCCTTGACGCCAGAAGAGGAT
GTCAGATCCCCTGGAACTGAGTTGTGGATGGTTGTGAACCTCCACGTTGG
TGCTGGAAAGTCCTTTGGAAGTCTATCTTCTTCTGCTCGGTCACATTTCC
GTAGGTTATTGAGGAATCCATAGGTGTCTGTTTCTGATTCTACCCTTGCA
GAAGAGATTAACCACGTCTCCTTTCCCAAGATGTATTTTTTATTAATTCT
GCGTGAGTGTGTTTGTTACCGCTTATCTCACATATTGGTGAAACCTCCCC
CTCATAACACTATATCCCCTCCCCCCCGTTATTTATCTTCCCTTACCATT
TTCAACCCACCCCTCTCCCCCCTTTTTTTATTTTCATTCCCCCACCTTTT
TTTCTTCTTTTCCCCCCATTCCACCCCCCCCCTTTCTATCTCCCCCAACA
TTATATAACCCCCACTATTTTCTCACATTCCTCCCATATCATCTCCCTCT
TTTCTCCCGACTCTGTTTGTTCTTTTTATTCCCCCTCCTTTTTCCCCCTC
TTATTATTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f22.b1 MSMg01no443_f22.b1 CHROMAT_FILE:
MSMg01no443_f22.b1 PHD_FILE: MSMg01no443_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:57 2005
         (453 letters)



>mm_chr17_87166311_87167165
          Length = 855

 Score =  849 bits (439), Expect = 0.0
 Identities = 449/453 (99%), Gaps = 2/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatgaccacaagcctcctgtgtttcttcgctttc--gggttttgccagattctaaatg 58
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 201 agaatgaccacaagcctcctgtgtttcttcgctttctcgggttttgccagattctaaatg 260

                                                                       
Query: 59  ccgtcagggccactggctcttgttttatgtccctggcaaagctggccttcccatgaagtt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtcagggccactggctcttgttttatgtccctggcaaagctggccttcccatgaagtt 320

                                                                       
Query: 119 caaagccgctttcaggcatcttgggagtctgggagactgctttcgcttgctctctgcttt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagccgctttcaggcatcttgggagtctgggagactgctttcgcttgctctctgcttt 380

                                                                       
Query: 179 gtgcggacctaggttggagatgtcacctctgtctgctgctctctgaatacgaaccaggga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcggacctaggttggagatgtcacctctgtctgctgctctctgaatacgaaccaggga 440

                                                                       
Query: 239 atgttctattaagaccacgtgctttaaatgtatattttaaaagcacactttgtgagtatt 298
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttctagtaataccacgtgctttaaatgtatattttaaaagcacactttgtgagtatt 500

                                                                       
Query: 299 atcttaatggaaagaactttgaaaagtataaagtgcaaaccttctaggcattgtcattaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttaatggaaagaactttgaaaagtataaagtgcaaaccttctaggcattgtcattaa 560

                                                                       
Query: 359 ggagcagagcaatatactcattaggtgtgttattacctcttaaaagtgaaccgcctgcag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagcagagcaatatactcattaggtgtgttattacctcttaaaagtgaaccgcctgcag 620

                                            
Query: 419 acaggaggaagccttgagagaggctaacaggag 451
           |||||||||||||||||||||||||||||||||
Sbjct: 621 acaggaggaagccttgagagaggctaacaggag 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 855
Length adjustment: 10
Effective length of query: 443
Effective length of database: 845
Effective search space:   374335
Effective search space used:   374335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)