BAC Information

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BAC

Clone NameMSMg01-443H09
Chromosome17 (Build37)
Map Location 17,997,019 - 17,997,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H09.T7 (MSMg01no443_h09.b1)MSMg01-443H09.TJ (MSMg01no443_h09.g1)
ACCAG532862AG532863
length761825
length of high quality
(start - end)
245 (78 - 322)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no443_h09.b1 PHD_FILE: MSMg01no443_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005CHROMAT_FILE: MSMg01no443_h09.g1 PHD_FILE: MSMg01no443_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAGAATCC
GCGGAATTCAGAGCTTTGCCTATGACTAGCCAGCACTCTAGCTACTAACA
ACTGTAGCCCCAGTTTTTATTTTTGAACTTCTTTCATGAAGAACTAAGGA
GGGTAAGTGGCCACTAAAAAGTAACTTAGAGTATGTGTTCTATTAATTGC
GTGAATCCAGTCATGTGGTTACTCTACTGAGTGTTCTGATTTAGAAAGTA
AATACTTTGAAGAAATGCAGAACTAGAGACATAGGATAGGTGGAGGTATC
ATTCACAGATCATGTGTTTGATCATTCTTTAACCAGCTGGTGGCACTGTT
TTAAAGTTTGAGGAACTCTATGTGTGCATGTGTGTGTCTCTCTCTCTCTG
TGTATGTGCGTATGGTTTCCTAGTTCCTGTCTTCTTGAAGAATAGGATCC
AGTCTTAAGATTTGGTATTTTCTTCCCACGATCCTCTAGAAAAGTCCCCA
CAAGGATAATTAATATCCCCTATTCGAGTTGATCTACATACATTCTTATT
TTTTATATACATCTCTTTTTGCCTCTTTTTACCTTTGTTTTTTTTTTCGC
CCCCTCCGCCCATCTTTTTTTTCTCCCCCTCTTTTCTCCCCACCACCCTA
TTTTCCACCACTTATCCCCCTTTCTTTTTTCATTTATGCCTCTCATTCAT
CTTCACCCTACACCTTTTTAATTTTTCATTCTCCTATTCTTATTCCCCCT
CTTCAACTTCN
TTCTTCGATGAAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTCAGACAAGTGTGTGTGT
GTGAGTGTGCGCGTGCCCGTGCGCGTGAGTATACACAACAAGAAATGTTC
TTATTTCACAGTCGGGCAGTGGTGACCCTTGCCATTAATCCCAGCATTTG
GGAGGCAGAGGCAGGCGGATTTCTTAGTTCAAGGCCAGCCTGGTCTACCG
AGTGAGTTCCAGTATGTCCATGGCTATACAGAGAAACCCTGCCTCAAAAA
CCCAAGAAAGAGAGAGAGAGAGTTTTATTATAGGGGGGGGTTCCTCCCCC
CCCCTTTCTCCTTTTTTATTTCCCCCACCTTCCCCTCTTTTCTCTCGTTC
CCCCCCTCTTTTTTCTATCCCCTTTTCTCCTCCCCCCCCTTCCCCCCCTT
CTTCCCTTTTTCTCCATTCCCCCTTTCCTTTCTTTTCCCTTTCCTCCCTC
TTTTTTCCCCCCCCCCCTTCTTTTTTTCTTTCTCCCTTTTCTTTCTTTTT
TTTCCCCTTTCTCTTCTTCCCTTCCTCCTTTTTCTTACCCCTTTCCCTCT
TTTTTTTCTTCCTTCACCCCTTTTCCCCCTTTTAACCTCTTTCTTTCCCC
TCTCCCCCTCTTTATACTATAACCTTCCCTTCCCCCTTTATTCCCCCTTT
TACATTTTCTCCTATTTTCCTTATTCACCCACCTTTCCCACTCTCACCCT
CCCTTTCCCCCTCCACTCTTTTCATATCCTCTTTAATCTCTACCCCTTTC
CCTTCCCTCCTATGTTACTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h09.b1 MSMg01no443_h09.b1 CHROMAT_FILE:
MSMg01no443_h09.b1 PHD_FILE: MSMg01no443_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:04 2005
         (245 letters)



>mm_chr17_17996819_17997463
          Length = 645

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccagcactctagctactaacaactgtagccccagtttttatttttgaacttctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccagcactctagctactaacaactgtagccccagtttttatttttgaacttctttcat 260

                                                                       
Query: 61  gaagaactaaggagggtaagtggccactaaaaagtaacttagagtatgtgttctattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaactaaggagggtaagtggccactaaaaagtaacttagagtatgtgttctattaat 320

                                                                       
Query: 121 tgcgtgaatccagtcatgtggttactctactgagtgttctgatttagaaagtaaatactt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgcgtgaatccagtcatgtggttactctactgagtgttctgacttagaaagtaaatactt 380

                                                                       
Query: 181 tgaagaaatgcagaactagagacataggataggtggaggtatcattcacagatcatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagaaatgcagaactagagacataggataggtggaggtatcattcacagatcatgtgt 440

               
Query: 241 ttga 244
           ||||
Sbjct: 441 ttga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)