BAC Information

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BAC

Clone NameMSMg01-443K20
Chromosome17 (Build37)
Map Location 45,847,007 - 45,847,260
singlet/doubletsinglet
Overlap genenone
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
Downstream geneLOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K20.T7 (MSMg01no443_k20.b1)MSMg01-443K20.TJ (MSMg01no443_k20.g1)
ACCAG533026AG533027
length694754
length of high quality
(start - end)
254 (77 - 330)343 (78 - 420)
definitionCHROMAT_FILE: MSMg01no443_k20.b1 PHD_FILE: MSMg01no443_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:21 2005CHROMAT_FILE: MSMg01no443_k20.g1 PHD_FILE: MSMg01no443_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAT
CCGCGGAATTCACAGGTGTGTTACACCAAACCTGTCTGTCGGTCCTCCTT
TATGTGTGTGTGGGCATGCATGTGAGTGTGTACATGTGCGTGCAGGCACT
GCTAGTACCACTGTCTTAAGTACGCTGGGACAAGGAACCATGAGCAAAAA
GCCAGGCAGCAATGGGTTAAAGCTGCAGCCCTCCAGCAGCCCAAGGGCTG
CCTCTGCCAGCTTACCATTGCTACTTTGAACCACAAACAGCATGCAGGTC
TCGATACAGTCCACTCACTCACTGTCACATCTGTGGCTTTGGCTGGGGCT
GAGGGCATCCCCAGGGTATCCCCACTTAACCCTATCACTTGGCTAATTCT
GACTAGTCTCCCCATCTTCCAGGTTGACGGCTGCTAGTGATGGTGCCTTA
ACACCATCCCAGAATAAAATGTTCAAGGGGCTGGCAAATCTCCCCCCAGA
AATTTGCTTAGGGCCCATAACCTAATTAAACAACCGGTATGACCCCCAGG
GTATTGTTTTCCAATGGGGTGGGCCTAGATGGGGTACCGCGCCGGCCCCC
GCGGGCCAAGGGCCCCTATCCCATTGGCAACAACTTTGGCCAATAAAAAA
TAACTTTCGGAGTGTGGCCCTCGTTTTTCTCTCTCTTTGTTCCN
NNCCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACCCAGGTCCTCTGGAAGAACA
ACAGCCAGTGTTCTTAACCACAGAGCCAGCTCTCCAGCCCCATAGTATTT
ATTTTATTCTCAATTATGTGTATGTGTTGTATGAGTATGTGCATGTGATG
CCAAAGGTCAGATATGGAGTTCCAGGTGGATGTGGGAGCTGGGAACTAAA
GGCTGGGTCCAAGCCGGGCAGTGGTAGCACACGCCTTTAATCCCAGCACT
AGGGAGGCAGAGGCAGGCAGATTTCTGATTTCTAGGCCAGCCTGGTCTAT
AGAGTGAGTTACAACAGCCAGAGCTATACAGAGAAACCCTGTCTCTNAAA
AAAAAAAACCAAAAAATATTAAATAACAAAATAAAGGCTAGGTCCTCTGC
AAGAGCAGTATGTGGTCTTAACCGCTGAGCCGTCCCTCCACCTTTCCGTT
TGCCTTTTTTAATAAGGCACTTATCACGCTTGATTTAGTAAACCCAATGG
CTAGGGAATTTATCTTCTCACGCTTACCCAGAAAATTTTCAAATATTCTT
AGTCTCCAGTCTGGGTTTAGAAGCTCCAATTTACTTTTCTTGGTTTTAAA
TTTTGGGGGAGAGAATTACAATGAATTCCAGGGCCGCCCGGGGCTATGTC
CCGTTTCTTCATGTTAACCTGGCCTTACGCAGTAAGAACTCTGCCTTATA
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k20.b1 MSMg01no443_k20.b1 CHROMAT_FILE:
MSMg01no443_k20.b1 PHD_FILE: MSMg01no443_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:21 2005
         (254 letters)



>mm_chr17_45846807_45847460
          Length = 654

 Score =  445 bits (230), Expect = e-129
 Identities = 248/254 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacctgtctgtcggtcctcctttatgtgtgtgtgggcatgcatgtgagtgtgtacatg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caaacctgtctgtcagtcctcctttatgtgtgtgtgggcatgcatgtgagtgtgtacatg 395

                                                                       
Query: 61  tgcgtgcaggcactgctagtaccactgtcttaagtacgctgggacaaggaaccatgagca 120
           ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 394 tgcgtgcaggcgctgctagtacaactgtcttaagcacgctgggacaaggaaccatgagca 335

                                                                       
Query: 121 aaaagccaggcagcaatgggttaaagctgcagccctccagcagcccaagggctgcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaaagccaggcagcaatgggttaaagctgcagccctccagcagcccaagggctgcctctg 275

                                                                       
Query: 181 ccagcttaccattgctactttgaaccacaaacagcatgcaggtctcgatacagtccactc 240
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 274 ccagcttaccattgctactttgaaccacaaacaggatccaggtctcgatacagtccactc 215

                         
Query: 241 actcactgtcacat 254
           ||||||||||||||
Sbjct: 214 actcactgtcacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)