BAC Information

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BAC

Clone NameMSMg01-444P14
Chromosome17 (Build37)
Map Location 45,598,160 - 45,598,397
singlet/doubletsinglet
Overlap geneSpats1
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l
Downstream geneEG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444P14.T7 (MSMg01no444_p14.b1)MSMg01-444P14.TJ (MSMg01no444_p14.g1)
ACCAG534014AG534015
length799756
length of high quality
(start - end)
238 (79 - 316)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no444_p14.b1 PHD_FILE: MSMg01no444_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:02 2005CHROMAT_FILE: MSMg01no444_p14.g1 PHD_FILE: MSMg01no444_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATATTTGCCGGCGCTAATAGANGACTATAGGTACTGAATCCGC
GGAATTCCTCAGGATATCTCTCCTTTGGGATTTCAGGCAGCGAAACTTTT
GAGGAACGATTAGACTGAGCTTAGGAAGAGGAGGAAGAGGAAGAGGAGGA
GGTCTTCTGACCCAGCTCCGCAGCCGTGCTGGAAGGCAAGTGGAAGGGTT
AGAGTCATCACTGTGCTCATACCAGAGTCTGTGCCTGTCAGACCCTGATC
TTCTATTCATAGCACATGAGTCCTCATCCAACAGGACTGGCCTCGCTTCT
CTATAAAGTCCCTGAGTGTGGTTTTACTATTCTCAGCTTGGAGGCTCCTA
TTCACAAGATGTGCATTTTTTTACCCCCACGCATCGGTGTTTGCTGCACC
GCCTTCGACCCTGCTCTTGATCCCTGGTTACATGTGTGGCTCATCTAGTC
CCCCCTTCCCCTGTGTTTTCCCTGTATCCCCTCCTGTTTATTCTCGTGTT
CCCCTTTGTTGCATGTCCCGTTTGTCCCTTTCTGTCTCTTTTCCCCCCCC
CTCTTTTCTTTCCCCCCCTTTCTCTTCCTTTGCCTTTTCCCCTTCGCCTT
TCCCCCCTTTCCCCTTTTTTTTTCCCTCCCTTCCTCCCCCTTTTTCTCCT
TTCTTCCCCCCATGTTTTCGTCTTCTTTTTTTTTTCCTCCCCTTTCCTTC
TCCTCTTATTCCCCCCTTTTCTCCCCCCCCTCAGTCTCTCCACTTTCTCC
TTTTTATCCTTCCCTTTTGCCCCCTTCCACTCCCGCGCCCTCTATCTTC
CGATGATGTGGGAGGCCTGGCGGCCGCCTGTTTTCACAATTGAGGTGACC
TATAGAATTTTCGCGAAATTCCAGGTCAGCCAGAGTTACAGAGTGAGATC
CTGTCTCAAAAAAACAAAACTCAGGGTGGTGGAGAATTGGCTCAGTGGTT
AAGAGTGATTACTGTTTTTGAAGAGGACCTGGGTTGGGTGCCAGCACCCA
CAACAGCCTATGAGTCCAGTTCCAAGAGATCCAAAGTCCCCCAGGTCTCT
ATGTACACTTGCTCTGTGTGGTGTAAACACACAAATACATAATCTTGAAA
AAAACAAATCAATGGGGTACGTTCCCTAAGGACTGCAGTCAAAGGTAGTT
CTCTGGCTACACACACACACACACACACACACATACACAAACACACATGA
GAGTGGGAGGAGGGAGAGGGAGAGAGATTGTTTGATCTTATTTTGCTTCC
GACTCTTTCCTGCAATTCATTTTTTTATTCCTGTTCTCTCCCCTGACCAT
TTCTTTCCATGGCCCTAGTTCCTCCCTTCTTGTTCTGTTCCAAGCCTTTG
CCCTTTCCCCCTGCCTTTTTCATTCCCCTTTCCTTATCCCACCACTTTTA
ATTCTTCGATCGCTACTCCACTCTTCTTTCCTGCCGTCTTCTTTTTTTTT
TTTTTCTTAANGCCGGCACACGCGCGTAGAGTCTTCCTCTTTTTTCTTCC
GTCGTCTTCCTGTCTTACTCAGTCTTTTTCTCTATTCACCTTTCCTCCCC
TCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_p14.b1 MSMg01no444_p14.b1 CHROMAT_FILE:
MSMg01no444_p14.b1 PHD_FILE: MSMg01no444_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:02 2005
         (238 letters)



>mm_chr17_45597960_45598597
          Length = 638

 Score =  391 bits (202), Expect = e-113
 Identities = 229/238 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttcaggcagcgaaacttttgaggaacgattagactgagcttaggaagaggaggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 gatttcaggcagcgaaacttttgaggaacgattagactgagcagaggaagaggaggaaga 260

                                                                       
Query: 61  ggaagaggaggaggtcttctgacccagctccgcagccgtgctggaaggcaagtggaaggg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaagaggaggaggtcttctgacccagctccgcagccgtgctggaaggcaagtggaaggg 320

                                                                       
Query: 121 ttagagtcatcactgtgctcataccagagtctgtgcctgtcagaccctgatcttctattc 180
           ||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||| ||
Sbjct: 321 ttagagtcatcactgtgctcaaaccagagtctgtgccagccagactctgatcttctactc 380

                                                                     
Query: 181 atagcacatgagtcctcatccaacaggactggcctcgcttctctataaagtccctgag 238
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtacatgagtcctcatccaacaggactggcctcgcttctctataaagtccctgag 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)