BAC Information

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BAC

Clone NameMSMg01-445B08
Chromosome17 (Build37)
Map Location 70,783,565 - 70,783,916
singlet/doubletsinglet
Overlap geneDlgap1
Upstream geneA330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630, LOC623112, LOC623143
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445B08.T7 (MSMg01no445_b08.b1)MSMg01-445B08.TJ (MSMg01no445_b08.g1)
ACCAG534098AG534099
length730749
length of high quality
(start - end)
466 (63 - 528)406 (72 - 477)
definitionCHROMAT_FILE: MSMg01no445_b08.b1 PHD_FILE: MSMg01no445_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:10 2005CHROMAT_FILE: MSMg01no445_b08.g1 PHD_FILE: MSMg01no445_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCAG
GTCTTTCGGCTTGGTGGCAAGTGCTAGCTCACTGAGCTATCTCCCAAGCT
CTTTTGTTGTTGTTGTTTTATTTATTGCCTTAAATTTATAGTCTTTCTCC
ACCCCCAACTCCTCCCACATCCTACTCACCAAATCCATGCTATCTCCTTC
TCTTATTCTCTGGGAAAAAAAACCCAACAAAACCCAAGAAAACTAAACAC
ACACAAAAGATGGAAAAACAAACAAACAAAACCCCAAACCAAATAGTAAC
AACAACAACTTTTGTACACAAAAAATATTGAGTCTGTTTTTGTGTTGGCC
AATGCTGAGCACAAAGCAACACCCCCCGCTCCCCAATCAAGGTTGAGATA
CTCAGTGGCGCCCCACTGGAGAAAATTGGTTTTCCCTTTCCCAGCAGGTA
TCAGTGACAAACAGTGTCTTGGTTAGGGTGGGGCTCTGTGCCCTGCTCCA
CTCTTCTGTGATGCTGATGGAATTTTGTCTTCACCAGCTCTTTCTTAGAA
ATTTTTGTTGTTGTTTGTGTATGTACTGCTCTTCCCCTTAGTATTCAGTC
TCACCTCTTACTTCTTTTTCCATCTTTCCCTACCCTCCTTTTTTTTTTTT
CTACTTTTTTTTTCCTCTTCACATTTTGCTTTTTTCTCCTACTCCTCTCT
TTTCATTTCGCCCCTCTACCCATGTCTCAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGGGATAGTACAAACTTATGGTCACAG
CTCTGGGGGAAGCAGAGACAGGACAATCCCTGGAGCTAGCTGACCAGCCA
GCCCAGCTTACATGGTGAGTTTCAGGACATTGAGAAACTGTCTCAAAAAG
AAAGGTGGACAGCCTAGGCAGCCGTACTCTAGGGCAGTGGTTCTCAAACT
TCCTAATGCTGTGACCCTTTAATATGGCTCCTCATGTTGTGGTGACTCCC
AACCATAAAATTATTTCTGTTGCTACTTCTTAACTGCAATTTTGCTATAG
TTATGAATCATAATGTAAATATCTATGTTTCCTGGTGGTCTTAGGTGATC
CCTGGAAAAGGCGCATTTAACCCCCAAGGAATCACGACCACATATGTACA
TCCTCACACACAAACATAAACGTACACACACACACACACACACACCACAA
CGCAACACTCACTCTCAGGTGTATGAAACAATACAAATAAGACCACTGGG
ATCTCCCAAGTTAATGTGAAATTGCTTTGAAATTTCTGTGCCATGGGAAG
GGGCATAATTTGATACACCTTGGCTCTTCTCAAAAGGAGGTTATGGACCC
GCTCTCACCTAATTTACTTAGAGTTGTTTTCTCCATAGCCCTATTAACTT
TTATGTTAATCCGTTAATAGTCTAGGAACTACTAGAACTCTGGCGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_b08.b1 MSMg01no445_b08.b1 CHROMAT_FILE:
MSMg01no445_b08.b1 PHD_FILE: MSMg01no445_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:10 2005
         (466 letters)



>mm_chr17_70783565_70784431
          Length = 867

 Score =  588 bits (304), Expect = e-172
 Identities = 338/356 (94%), Gaps = 15/356 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtggcaagtgctagctcactgagctatctcccaagctcttttgttgttgttgttttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggtggcaagtgctagctcactgagctatctcccaagctcttttgttgttgttgttttatt 293

                                                                       
Query: 61  tattgccttaaatttatagtctttctccacccccaactcctcccacatcctactca-cca 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 292 tattgccttaaatttatagtctttctccacccccaactcctcccacatcctactcaccca 233

                                                                       
Query: 120 aatccatgctatctccttctcttattctctgggaaaaaaaacc--caacaaaacccaaga 177
           |||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||
Sbjct: 232 aatccatgctatctccttctcttattctctggaaaaaaaaaacaacaacaaaacccaaga 173

                                                                       
Query: 178 aaactaaacacacacaaaagatggaa----aaacaaacaaacaaaaccccaaaccaaata 233
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 172 aaactaaacacacacaaaagatggaaaaacaaacaaacaaacaaaaccccaaaccaaata 113

                                                                       
Query: 234 gtaacaacaacaac----ttttgtacacaaaaaatattgagtctgtttttgtgttggcca 289
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gtaacaacaacaacaaaa----gtacacaaaaaatattgagtctgtttttgtgttggcca 57

                                                                   
Query: 290 atgctgagcacaaagcaacaccccccgctccccaatcaaggttgagatactcagtg 345
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 56  atgctgagcacaaagcaacaccccccgccccccaatcaaggttgagatactcagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)