BAC Information

Click to search

BAC

Clone NameMSMg01-445D08
Chromosome17 (Build37)
Map Location 72,660,655 - 72,661,104
singlet/doubletsinglet
Overlap geneAlk
Upstream geneEmilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh, Lycat, LOC668709, Capn13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D08.T7 (MSMg01no445_d08.b1)MSMg01-445D08.TJ (MSMg01no445_d08.g1)
ACCAG534193AG534194
length734949
length of high quality
(start - end)
542 (40 - 581)---
definitionCHROMAT_FILE: MSMg01no445_d08.b1 PHD_FILE: MSMg01no445_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:20 2005CHROMAT_FILE: MSMg01no445_d08.g1 PHD_FILE: MSMg01no445_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACAGATTTCCACAGAGCTCAGCATTGCACACAGAGCTCCCCTGCTCCCTT
CACTGGCACGCACCCACCTTTTACTTTCCAAGTTTCTCTCACTATCCAAT
GTGAGATTTAATTCCTACCTTAAGCTTTTTGGCAACAAAATATAATTTTA
TTGATTTATAGATTCGCACACCAAATAACACCGCAGACGCCAGGTTTCTT
TCACTAGTTTCCATCAATACTAGTATCTTGAAAACCTCAGGAGTAATATT
ACTACAGCAGAATTAAGATATACAACATTCTTAGTACCTCAGGGAGCCCC
TATTACATTCGCATCTACTTCTCTCCAACTTCATCCCTGCCTGGTCTCCA
TTGAAATCACTACTCTGTCCTCTAACTCTCTAACTCTGTTTTATATTTTT
TAGATATAATTTTAAGAATGGACTGTACATAAATAACTTTTGAGGTTTGC
CTTTTTCCATTCTTCATAAATTCTCTGTAGATCCTCCCAGCTTTCCCTTC
CACACCAATGGCTTATTTCTTTTTTTGCTGAGTAATAATACCCTGTGGTA
CAAAGATGCCACGGNCTGCTTAACCATGCATTTGCTAAAACACATTCAGG
TTTCCAGATCAGGGTTGCTATGAAGAGCCCTGCTCTAAAAACCATGCCCA
CGTTTCCCATGGAATCATCTTCCGTTCTCAAGAG
ATATAATATTATTTTTGTAAATTTTCTTTTTTCTCGTATTGTGTGCTTAC
CCGCCAGGAATAACCCCGCGAGCCTCTTCCCCACACGCAGCCGCCACTGG
CCTTAAAATGATATATACTTCATTGGATGATTCTAACCCATATAACATAA
TCACTCAAATTCTCCACTCTTTACCCCTCAATTCCCAAACATTGCACCCG
CCCTGACACCCAAATATTATCATATACGCCCATTGTCTTCTTCTTCTTTC
TTCTCCCTACGTATACGCTGACATATAACTATAGACCGGAACATTTTCAA
AAGTAAAAATAGCACTTACACCATGAGAGTGCCAATCTATTCTTATATTT
ACAAATATTGATTATTCTTTATCCTATCTTCTTTCCTCCACCCTTTCTTT
TTTTTTTCATTTCTTATTTCTTCCATCAATACTTTCATGATTTCATATAT
TATCTATTTATGCTTAACACCGCTATAGCTGTATTTTGCAAACATAAGTA
TGTCGTGTGCGTAGTGCGCCGGTGATCACTACACCGTATCCCAAAGGTCG
TACCTTTTCACAGTTCGTCACACCACTCTGCGAACAACCCGTATAATAAT
TATGACGTGCTGCTATTACTTTGCTTTATTCTTCGACACCCATTTTATCC
TCCGTATATTCCCCGCTTTATCACATGATATAACCCGAACTATATCCCTA
TTATTTAATAACAACGGAGAGACACGGCGAGTACCTCTTGTCATTCGAGA
CCTATGTTTATATTATATTTTTTAACCTATCCGCTTGCGATTGCGACAAA
GTTGGGGTATGATATACTCGCAGCTAGTCACCATACCACTTCTAAGTCCA
CTGATATTCTCGCGTCCTCTTCTTCTGTTTATATCATTATTATCGGTTTT
TCGCGGATAACAGCGACTACTTACAGCTATGCCGGTCCGGCCACATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d08.b1 MSMg01no445_d08.b1 CHROMAT_FILE:
MSMg01no445_d08.b1 PHD_FILE: MSMg01no445_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:20 2005
         (542 letters)



>mm_chr17_72660655_72661596
          Length = 942

 Score =  839 bits (434), Expect = 0.0
 Identities = 446/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacagatttccacagagctcagcattgcacacagagctcccctgctcccttcac 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaattccacagaaatccacagagctcagcattgcacacagagctcccctgctcccttcac 391

                                                                       
Query: 65  tggcacgcacccaccttttactttccaagtttctctcactatccaatgtgagatttaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggcacgcacccaccttttactttccaagtttctctcactatccaatgtgagatttaatt 331

                                                                       
Query: 125 cctaccttaagctttttggcaacaaaatataattttattgatttatagattcgcacacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctaccttaagctttttggcaacaaaatataattttattgatttatagattcgcacacca 271

                                                                       
Query: 185 aataacaccgcagacgccaggtttctttcactagtttccatcaatactagtatcttgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aataacaccgcagacgccaggtttctttcactagtttccatcaatactagtatcttgaaa 211

                                                                       
Query: 245 acctcaggagtaatattactacagcagaattaagatatacaacattcttagtacctcagg 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 acctcaagagtaatattactacagcagaattaagatatacaacattcttagtacctcagg 151

                                                                       
Query: 305 gagcccctattacattcgcatctacttctctccaacttcatccctgcctggtctccattg 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 150 gagcccctattacattcgcatctacttctctccaacttcatccttgcctggtctccattg 91

                                                                       
Query: 365 aaatcactactctgtcctctaactctctaactctgttttatattttttagatataatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  aaatcactactctgtcctctaactctctaactctgttttatattttttagatataatttt 31

                                         
Query: 425 aagaatggactgtacataaataacttttga 454
           ||||||||||||||||||||||||||||||
Sbjct: 30  aagaatggactgtacataaataacttttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)