BAC Information

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BAC

Clone NameMSMg01-445I20
Chromosome17 (Build37)
Map Location 70,625,282 - 70,625,390
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I20.T7 (MSMg01no445_i20.b1)MSMg01-445I20.TJ (MSMg01no445_i20.g1)
ACCAG534456AG534457
length781731
length of high quality
(start - end)
109 (65 - 173)85 (69 - 153)
definitionCHROMAT_FILE: MSMg01no445_i20.b1 PHD_FILE: MSMg01no445_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:47 2005CHROMAT_FILE: MSMg01no445_i20.g1 PHD_FILE: MSMg01no445_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATGATTCGCATTTGGGTTGAAACCCTAAAGAATAGTAGTTTTCTTTC
AATATAACTTCTAAGAAATGTAGTTTTCTTGTCTTTCAGCAAACAGTTTG
AGAGACTAGTGTGATATCTCGTGCTTCAAAAACANCACTGCAGAGGCAGA
AAAAGGCAAATCACTTGGAGTCTAAAAACAACCCTGTGACTATGGTAACC
AACAATNCNCATTNNNNNNCCNNAACCACTTCTACTCTCAAAATAAAATG
CCAGNNNCAAAATTTTTTTTTCAGAGTATCACCCCACAAAAAAACTTTCC
CAAAAAGGTNNTAAAAAACCTCTCCCCCTTTCCCCTTTTTTTTTCAAAAA
AAAAAAACCCCTCGGTGATTTTTTTTTTTATTTTTAAAAAAAAAACACTT
TCTATCCAAAATTTTTTTTTTTTAAACATAATCTTTCCTCTTTTACTTTN
NNNCNCCTTTTATCTAACCCCCCCCCGGTGTATAAATAAGAAGGGGGGCC
TGNTTCTTTTTTCCCCGAGATAAATCCTTNTTTTTNANNTTTTTCCCTTC
ATACATCTCCCTCTCCCCTTCATCAACAGGATTGAGAAGTGGTTTTTTTC
TTTTATAAAATTATATNTTTCACAAACACCTCCTATAATTTACCCCTATA
TCCTTTTTTTTCCTCCTCTTACCATAACAACCCCTTCCTAACCTTTCATT
TTCTTCCTTCTTTTCCCTCTTTTTGTTATTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTACCTGCATGCAACCATAACATTCATATG
CCTACAAATATCAAAGTTGAAAGTTCGAGAGATTGCTCAGTGGATAAGGG
TACTTGGTGCTCTTCANAGNGATGCGACGNCATTTCCCAGTACCATCCAA
TGCTGTCTCTAAAAATGNNTNNTCGTNNNACTTGGGCTGGGGGGGGGGGC
GGGGGCTGGGGTGTTGTTGTTTGTTTATTGTTTGTGGTTTTTTTTTGTTG
TGTGGGGGTGGGCGGGGGGGGCGGGGGGGGGGGGGGGGGGGGCGGGGGGG
GGACGCCCCCTGATTTTCAACAAAAACCGGGCTTTTTAAAAAACAAAAAA
AAAAAAAAGCGCCCCCGAAAATTAAACCCCAGCCCCAAAACCCCACCCCC
CAGACNTTTTTTTTTTTTTTTTTTGTGTTTTTAACCAGTTTTTTCATCAT
CACCCCTAACGACCCCTTTTTTAACACACCCNTTTTAAAAAAAAAAAACC
CCCCCCCCCCCCCCCCACCTCCCTTCATCCATTTTCCCATTACAAACCNA
CTTATCCCCCCCTCCATTCCCCCCCTATTCCACCCCACCCCCCTTATACT
ACTCCTCTTCTCCCCCACAAAAACCCACACCCCACCCCACACCTACTAAC
ATATACCTCTTACTTTCTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i20.b1 MSMg01no445_i20.b1 CHROMAT_FILE:
MSMg01no445_i20.b1 PHD_FILE: MSMg01no445_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:47 2005
         (109 letters)



>mm_chr17_70625082_70625590
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggttgaaaccctaaagaatagtagttttctttcaatataacttctaagaaatgtagt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgggttgaaaccctaaagaatagcagttttctttcaatataacttctaagaaatgtagt 250

                                                            
Query: 61  tttcttgtctttcagcaaacagtttgagagactagtgtgatatctcgtg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcttgtctttcagcaaacagtttgagagactagtgtgatatctcgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)