BAC Information

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BAC

Clone NameMSMg01-445J19
Chromosome17 (Build37)
Map Location 9,970,922 - 9,971,038
singlet/doubletsinglet
Overlap genenone
Upstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445J19.T7 (MSMg01no445_j19.b1)MSMg01-445J19.TJ (MSMg01no445_j19.g1)
ACCAG534502AG534503
length766683
length of high quality
(start - end)
118 (65 - 182)36 (75 - 110)
definitionCHROMAT_FILE: MSMg01no445_j19.b1 PHD_FILE: MSMg01no445_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:52 2005CHROMAT_FILE: MSMg01no445_j19.g1 PHD_FILE: MSMg01no445_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACGGATCCGCGGAATTCA
NGNCTACCTGAATGTGTATATTGCTACTTCACCTATACCTGTGTATTCAG
TTGCATATCTTCCTCCTCTCCCCTTAATCCCCATCCTTCCCTCTCCTGTT
CCTCTCTATCTAGTGNGNGTGTGTATGTGTGATGTGATAAATCAAAAAAA
ACCCCCCCCAATCCTCACATCCCCCATGTGCCCCACTGTTTTTAACTTTT
CTTCTACCNAACTCCCTCANNNNCNNNNANNNTAAAAGCACACAACANCN
NCAACCCCTTTTACTACTTTTGGAGAGGCTGGGGGGGGGGGGGGGGGGGG
GGGGGGCTNTATTTNNNAACAATTCACAACCCCACACTCTTTTCCCCCAA
TATTTTTCCCCNNNNTTTCCTTTCCTATTGGGAACNTTTTTCTTTTNNNN
TTTNTANANNNNTNAAAATATTAAAAATATAAANNNTTCCCTTCCCCTAA
NCCCCCCCCCAAAATTATCCCCCCAACCCCCCCAAAAATACTTTCCCCCC
CTTATAACACCCACATATCCTTTCTTCACCCANACTTTTTCCCATTATTC
CTCCCTACACCCCAATTCTTATCCCCACTTACTTTTATAATTTTATTTTT
TTCCCCCCCTACCACACATACACCATTATATCCAACCCCCACCCTAAAAC
ACTTTCCTAAACCATTTTTTTTTTATCCTTACTTCTTCTATTCCTTTATT
ATTATTTTTATTTTTG
NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXANTTCCACCCCACAGAAGGNTTAATTCACT
CTGGCATCTCCAGAANCTCTGCAAAGATGGAGGNATTAAGATTCTTGCCA
CCTCCTGCACCCCGTGCNNCTCTGGNNGATTGCTTTCTGANAGTAGAAAN
NANNNCTAGGTGTGNNNNNNNNCGCCTANAGAAAAATTGTTTTTGATTTT
GGNNNCNCTGGGGGGGTGGGGGTGGGGTGGGCTGGGTGTGGGGGGGGCTG
GGGTGGTGGGTGTTGGGTTGTTGGGGGGTGGGCGGCTGGGGGGGGGGGGG
TTGTTTGGCTTGTGGGTGTGTGTGCTGGGGGGGGGGGGGCGGGGGGGGAG
AGGGGGCGGGGGGGGGGGGGGGGGGCTNNNNNNNNNNNAAAAACACCCTT
GNGAAGGGGGGGGGGGCTTTNNNNNCCNNANNNNCCCNNNNNNNNNNNNN
CCCCCCCCCCCCCCCCCNCNCCCACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCNCCCCC
CCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCACACCCCCCNNCCCTAT
CCCACACCCTCTCCTTTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_j19.b1 MSMg01no445_j19.b1 CHROMAT_FILE:
MSMg01no445_j19.b1 PHD_FILE: MSMg01no445_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:52 2005
         (118 letters)



>mm_chr17_9970722_9971239
          Length = 518

 Score =  199 bits (103), Expect = 4e-56
 Identities = 113/117 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatattgctacttcacctatacctgtgtattcagttgcatatcttcctcctctcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatattgctacttcacctatacctgtgtattcagttgcatatcttcctcctctcccct 260

                                                                    
Query: 61  taatccccatccttccctctcctgttcctctctatctagtgngngtgtgtatgtgtg 117
           || |||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 261 tagtccccatccttccctctcctgttcctctctatctagtgtgtgtgtgtgtgtgtg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)