BAC Information

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BAC

Clone NameMSMg01-448E22
Chromosome17 (Build37)
Map Location 75,869,672 - 75,870,074
singlet/doubletsinglet
Overlap geneRasgrp3
Upstream geneLOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
Downstream gene2810405J04Rik, LOC668787, LOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448E22.T7 (MSMg01no448_e22.b1)MSMg01-448E22.TJ (MSMg01no448_e22.g1)
ACCAG536553AG536554
length779770
length of high quality
(start - end)		407 (49 - 455)329 (82 - 410)
definitionCHROMAT_FILE: MSMg01no448_e22.b1 PHD_FILE: MSMg01no448_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:32 2005CHROMAT_FILE: MSMg01no448_e22.g1 PHD_FILE: MSMg01no448_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCTCTGGTACCGAAAAAAGAGAATGCCCGTTTACATGGGAA
TTCACTGGCACTAGGCACTCTCTCTCACTGCCACAATTTCAAGTAGGGGT
GTGGGCATCATTCCCATTGTTTACAGAGAGGAGACTGAGAATAAGAAAAT
GTACGTAACTTGTCCACAGTCATGGAGGAAGTACGTGCAGGCAGAATTCT
ACACAGTGTAAACAATCTATTAGCCCCGAATCCCAGGAATTTCTCTGTTT
ATGCTGTCATCCAGGGGAAGACGGGGTTCAATTACATCATTCAAGTGCAC
ATTTTGAATTGTCTTTTGTAGTGAAAAAGGCTGTACCTTGTCATGATCTT
CTGTTAGGCATTGGTTTATGACTAGTTTGTGGTGTGCTGGCTGATGGGTA
TTGTTGGCGGCATTAAGTAAGTTCTACGGGCCATTTTATTTGTATTTTCA
CCTCTCGTATTCTTGTACCCTTCGAACCGGTTTTCGAAATTTCCTATTTT
CCTTTCCCGCCCTTCTCCTCCTATTACACTATGCCCCTTTCCCTATCCCC
CCTTTTTTCCTTTTCCCTCCTTTTATACTTCCGGGCGTCTCCCGCGCTTC
TTTTTTTCCCCCTAACACCATTTCTTCTCTTCGTCCACTTCAATTTTTCC
CTCTTTTTTCGCCCTTTCTTATATTTCCCTTCCCCTCCCTTTATTCGCTA
AAATTTTTTTTATTCTTGTCCGCCCCCCG

AAAANCCGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGCCCCAGTTGG
CTACAACTTGAAGCAATCCTCTTGCCTCAGCCTTCAAGTCATGGAACTAT
GTACATGATTCACAAAACCTAGATTACTTTTGAAGAATTCACTCTTTTCT
CTTTTTAAGAAGACATTTTGGTTGGAAATGCTTTCTCTTTTTTCCCATGT
TTTTATTTCTTGACGCTTTCATGTATGAATACAATGTATTGTTTTCATAC
ACACTCCTATTGCCCTCTCTTATTTCCTTCTTAATCCTGATTACTTCCAA
CTAGCCTTCCTCCTGCTTTCATGTTTTTGAGGATGGAGTGAAGTGGGGAC
AGGGGGNGNNNNNNNNNNNNNNNNNNNNNNNGGNNNGGNNNNGNNGGGGG
NNGNGNGGGGGGTGGNNGGTTGTGGGGGGTGTTGGTTTGTTGGTTTTTTT
GGGGGGCGGGGGTGTGTTTTGTGTGTTTTTGTTTGTTTGGTNTGGTTGTG
TTTTTGTTGGTGTGTTTTTTTGTTTTTTTTTTTGGGTTNTGTTTTGTGTT
TTTGGTTTGGTGGTGGTTTTGGGTTGGTGGTTGTTTGTTGGTTGGTTTGT
GTTGGGTTTTTTTGTTTTTTTTTTTTTGTTTGTTTTGGGGTTTTTTTGGT
TGTTTTTTTTTTTTTTTTTTGTTTGGGGTTTGTTTGTTTTGTTTTTTTGT
GTGTGTTGTTTTTTGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_e22.b1 MSMg01no448_e22.b1 CHROMAT_FILE:
MSMg01no448_e22.b1 PHD_FILE: MSMg01no448_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:32 2005
         (407 letters)



>mm_chr17_75869468_75870274
          Length = 807

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctctggtaccgaaaaaagagaatgcccgtttacatgggaattcactggcact 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctctgggattgaaaaaagagaatgcccgtttacatgggaattcactggcact 264

                                                                       
Query: 65  aggcactctctctcactgccacaatttcaagtaggggtgtgggcatcattcccattgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcactctctctcactgccacaatttcaagtaggggtgtgggcatcattcccattgttt 324

                                                                       
Query: 125 acagagaggagactgagaataagaaaatgtacgtaacttgtccacagtcatggaggaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagagaggagactgagaataagaaaatgtacgtaacttgtccacagtcatggaggaagt 384

                                                                       
Query: 185 acgtgcaggcagaattctacacagtgtaaacaatctattagccccgaatcccaggaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgtgcaggcagaattctacacagtgtaaacaatctattagccccgaatcccaggaattt 444

                                                                       
Query: 245 ctctgtttatgctgtcatccaggggaagacggggttcaattacatcattcaagtgcacat 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctgtttatgctgtcatccaggcgaagacggggttcaattacatcattcaagtgcacat 504

                                                                       
Query: 305 tttgaattgtcttttgtagtgaaaaaggctgtaccttgtcatgatcttctgttaggcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgaattgtcttttgtagtgaaaaaggctgtaccttgtcatgatcttctgttaggcatt 564

                                                      
Query: 365 ggtttatgactagtttgtggtgtgctggctgatgggtattgtt 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtttatgactagtttgtggtgtgctggctgatgggtattgtt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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