BAC Information

Click to search

BAC

Clone NameMSMg01-448I03
Chromosome17 (Build37)
Map Location 77,573,974 - 77,574,370
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043886, EG624348
Downstream geneLOC545234, LOC100043887, LOC668795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448I03.T7 (MSMg01no448_i03.b1)MSMg01-448I03.TJ (MSMg01no448_i03.g1)
ACCAG536705AG536706
length699734
length of high quality
(start - end)
401 (52 - 452)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no448_i03.b1 PHD_FILE: MSMg01no448_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:48 2005CHROMAT_FILE: MSMg01no448_i03.g1 PHD_FILE: MSMg01no448_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTGTTTTCCGACCTGATACATCCAAAGCTATGATTACT
GTTGTTTTTAAAAGTTTATGTTTTATGGTAATGCACATATATGTTATAAA
ACAATTTAACAGTTTTCAGGGAATTAAATAATATGGCATTTCCCAATCAA
TTTGATTCAAGTTTAAATTATACAGAGACTTTGGTAAAGAATATAACTAA
GTTCTTTGGTAATTAGCAGTAACAGAACTAACAGGACCTTGTGGAAGAGA
CTTAATACTGCATCTTCTAAAGCCCAGACACTCAAACACCAGTGCTTATT
GTTTCTTTTCTTTTTATAGCTCTACAGGGCTCAAGATATCAATATTCCTA
TTCAGCATTCTATTTCATGTTTAGACGAACGATTGTACCTTTGTAATATG
TGGTTCAAAATAGGGAGGTACAAAACTGAGGCATATAATCACGTTGGTGA
CACAGTGCAATGCTCTGTACAACTCTGGACTGTTTCTAAGCTGGATGTCT
GTTTATGATTTCAATGTTATGTTCTTTGGAAACTAGAGGTCAGGTATCTG
TAATAAATCGTGACATTGCAGCTTTTGTCATGTGACTAATAAATTATTCC
TCTCTCCGGTAAAGGTGCTTCTCGCTCCTCAACCATTTTCTCCGTCGTN
AGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGGAATTTTTGGGGTCA
TGTAAGTACACTATCTTCTGCTAATATTGATATTTTTGACTTCTTCCTTT
CCAATTTGTATCCCTTTGACCTCCTTTTGTTGTCTAATTGCTCTAGCTAG
AAGTTCAAGTACTATATTGACTAGATAGGTGTGGGAAGCCACATATGCCA
TTACAAGGTGGCGCTGGCTACTGCTGGCCACCACGCATAAGTTTGGGTAA
ACAACCAATGTGTACATATGTTTTATAGTTTTTCACCAAGTCACTGCCTG
GCCCAGGCATGATAATGAGGCTCTACAAGGTACTGAGAGAGAATAACCAA
TCAGATGAGAGACATGCAAATGAGGTAGAATGCATAACCAATCCAGGTGT
GAGACATGCCTCTCCTAGGCCTATATAAGCAGCACCAGTTCTGGGCTCGG
GGTCTTCTTGCCTTCTCAGTAAATGCTCTCCCAATAAACATGTTGCAGAA
GGATCCTGTTGTGGCATCTGCTTTGCTTGGAAGTCCGGCACTCACGGGTA
GAGAGTGGGCAGTCCTGTCTATGCCCTGATTTTTGTGGCATTGCTTCTCG
CTTCTTTCCTTTCAATTTGAGGTTGCCTACCGGCCCACTGCTTTTTGGTT
TCTCTATTTTTTTACCCGGCCTCCTCCATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_i03.b1 MSMg01no448_i03.b1 CHROMAT_FILE:
MSMg01no448_i03.b1 PHD_FILE: MSMg01no448_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:48 2005
         (401 letters)



>mm_chr17_77573770_77574570
          Length = 801

 Score =  745 bits (385), Expect = 0.0
 Identities = 394/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgttttccgacctgatacatccaaagctatgattactgttgtttttaaaagt 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgttctcagacctgatacatccaaagctatgattactgttgtttttaaaagt 264

                                                                       
Query: 65  ttatgttttatggtaatgcacatatatgttataaaacaatttaacagttttcagggaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatgttttatggtaatgcacatatatgttataaaacaatttaacagttttcagggaatt 324

                                                                       
Query: 125 aaataatatggcatttcccaatcaatttgattcaagtttaaattatacagagactttggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataatatggcatttcccaatcaatttgattcaagtttaaattatacagagactttggt 384

                                                                       
Query: 185 aaagaatataactaagttctttggtaattagcagtaacagaactaacaggaccttgtgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaatataactaagttctttggtaattagcagtaacagaactaacaggaccttgtgga 444

                                                                       
Query: 245 agagacttaatactgcatcttctaaagcccagacactcaaacaccagtgcttattgtttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagacttaatactgcatcttctaaagcccagacactcaaacaccagtgcttattgtttc 504

                                                                       
Query: 305 ttttctttttatagctctacagggctcaagatatcaatattcctattcagcattctattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttctttttatagctctacagggctcaagatatcaatattcctattcagcattctattt 564

                                                
Query: 365 catgtttagacgaacgattgtacctttgtaatatgtg 401
           |||||||||| ||||||||||||||||||||||||||
Sbjct: 565 catgtttagatgaacgattgtacctttgtaatatgtg 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)