BAC Information

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BAC

Clone NameMSMg01-448K07
Chromosome17 (Build37)
Map Location 30,167,937 - 30,363,267
singlet/doubletdoublet
Overlap geneZfand3, Btbd9
Upstream geneSfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K07.T7 (MSMg01no448_k07.b1)MSMg01-448K07.TJ (MSMg01no448_k07.g1)
ACCAG536808AG536809
length747751
length of high quality
(start - end)
326 (72 - 397)423 (81 - 503)
definitionCHROMAT_FILE: MSMg01no448_k07.b1 PHD_FILE: MSMg01no448_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:59 2005CHROMAT_FILE: MSMg01no448_k07.g1 PHD_FILE: MSMg01no448_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,362,943 - 30,363,267)(30,167,937 - 30,168,359)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAGATCCGCGGAAT
TCCTGGGTATGACGGCTAAAGTCAGGCAGGAGAGCTCTTCTCACACCTCG
GTGGTGGCTAAGTGTGTATAGTTCTCATTAACTGTGATATAGATAAGTAC
TCTGTACCGGGAGATCCTCCCTAGACATCCTCTTGGAACTTCTGTACCAT
GGTCTGCCTCTTGATGATGAACAGTCACTTTCCTAAGAGTTGGGACGGGG
CCAGGGACAGTGTTACATCAAGTTAGGGTGGCCCCTAACATCTGATTGCT
GTGTCTCCCTAAAAATCATGAGAGATAGTGAGATGCCAAAGTGGGCACTG
CTCCACCCTGGCCTATACCTCGGGTAACTGCATCATATGCTCATGGTTTT
GCGTTGTGCATCATACATGCTATTGGAGGTTTGTTGTCGTTTGCTGAGCC
TGACCATGTTCTAGGACCTACCTTTTCTCTGTCTATCATAGTGCTCTTCC
CCGAATAGTTCCGTATTCGTTTCTCCTTTCTCTCTCTTTCACGCCTTCCC
ACGTACGTCAATTATTTCACCGCATCTCCGTTTGTCCCTTGTATTCCCCT
ATGCCCCAGCCTATGTTTCCAATGCGCCCCTCCTTTCCTTGTATCCTTCC
TTAGTACCATCTTTCCTTTACGTTCCTTTGTTTCCTTATCCCCCCATTTT
GTTTTCCATTCCACTGCATCCGCAAATCTATTCCCTCCGCATACACT
AAAAAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTGTTGTGTGTGTATC
TGGATGCATCCGTACATATATTGGCCACTGACCTTCTGCATTATGCATAT
TAGAGAAGTGCTCTGTCACTGAGGCTTAGCCCTAGCCTGGTAGATTATTA
CTATATGGTGTAATATTCTTATGTATATTTTGTAGCAACATGTTCCAGAG
CCAAACAAAATGAATTAATGGTTGCAAAGGCATAGATGTATGCGCCCAAA
TCTTTGGTTTTACTTGCTATTATTTTATATTTTAACATTATATTAAATAA
TTGGATCACTGTATTTTTCAGTATGGATGACAGTTTATTACTGGTAAAAC
ATCTTGCTGTTTCAGGTCCTTCAGAACATGTGTTTGGGATGAAATACTTA
ACAACACCTGGAACCAGATGTATTTGACATTTGATTCTTTTGAACAAAAT
ATTCTGTTACTGTCAAGAAGGTGTGGAGATGTCGGCTTGAACCTTTTGTA
GGAGCTTGCTGTATTTGAAGGCAGGCCTTTATGCTGAACTCCTCCCCGGC
CCCTTAGATTGATATTTAATTTTTTTTTTGTCCTCGTCTGTTGTCTTTGT
TTTTTATCACTTTTCATTTTTTCTAAGTGCGTTTCCATCCCTCCTCCCTT
TCTTTTTTCCTTCCCCTTTTAATTTTTCTCCTCCTTTCCCCTCTTCTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k07.b1 MSMg01no448_k07.b1 CHROMAT_FILE:
MSMg01no448_k07.b1 PHD_FILE: MSMg01no448_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:59 2005
         (326 letters)



>mm_chr17_30362743_30363468
          Length = 726

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggcaggagagctcttctcacacctcggtggtggctaagtgtgtatagttctcattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcaggcaggagagctcttctcacacctcggtggtggctaagtgtgtatagttctcattaa 466

                                                                       
Query: 61  ctgtgatatagataagtactctgtaccgggagatcctccctagacatcctcttggaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctgtgatatagataagtactctgtaccgggagatcctccctagacatcctcttggaactt 406

                                                                       
Query: 121 ctgtaccatggtctgcctcttgatgatgaacagtcactttcctaagagttgggacggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgtaccatggtctgcctcttgatgatgaacagtcactttcctaagagttgggacggggc 346

                                                                       
Query: 181 cagggacagtgttacatcaagttagggtggcccctaacatctgattgctgtgtctcccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagggacagtgttacatcaagttagggtggcccctaacatctgattgctgtgtctcccta 286

                                                                       
Query: 241 aaaatcatgagagatagtgagatgccaaagtgggcactgctccaccctggcctatacctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaatcatgagagatagtgagatgccaaagtgggcactgctccaccctggcctatacctc 226

                                    
Query: 301 gggtaactgcatcatatgctcatgg 325
           |||||||||||||||||||||||||
Sbjct: 225 gggtaactgcatcatatgctcatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no448_k07.g1 MSMg01no448_k07.g1 CHROMAT_FILE:
MSMg01no448_k07.g1 PHD_FILE: MSMg01no448_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:59 2005
         (423 letters)



>mm_chr17_30167737_30168559
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtgttgtgtgtgtatctggatgcatccgtacatatattggccactgaccttctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtgttgtgtgtgtatctggatgcatccgtacatatattggccactgaccttctgca 260

                                                                       
Query: 61  ttatgcatattagagaagtgctctgtcactgaggcttagccctagcctggtagattatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgcatattagagaagtgctctgtcactgaggcttagccctagcctggtagattatta 320

                                                                       
Query: 121 ctatatggtgtaatattcttatgtatattttgtagcaacatgttccagagccaaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatatggtgtaatattcttatgtatattttgtagcaacatgttccagagccaaacaaaa 380

                                                                       
Query: 181 tgaattaatggttgcaaaggcatagatgtatgcgcccaaatctttggttttacttgctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaattaatggttgcaaaggcatagatgtatgcgcccaaatctttggttttacttgctat 440

                                                                       
Query: 241 tattttatattttaacattatattaaataattggatcactgtatttttcagtatggatga 300
           || |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tagtaaatattttaacattatattaaataattggatcactgtttttttcagtatggatga 500

                                                                       
Query: 301 cagtttattactggtaaaacatcttgctgtttcaggtccttcagaacatgtgtttgggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtttattactggtaaaacatcttgctgtttcaggtccttcagaacatgtgtttgggat 560

                                                                       
Query: 361 gaaatacttaacaacacctggaaccagatgtatttgacatttgattcttttgaacaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatacttaacaacacctggaaccagatgtatttgacatttgattcttttgaacaaaat 620

              
Query: 421 att 423
           |||
Sbjct: 621 att 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)