BAC Information

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BAC

Clone NameMSMg01-449L09
Chromosome17 (Build37)
Map Location 89,631,177 - 89,631,416
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449L09.T7 (MSMg01no449_l09.b1)MSMg01-449L09.TJ (MSMg01no449_l09.g1)
ACCAG537617AG537618
length773744
length of high quality
(start - end)
178 (82 - 259)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no449_l09.b1 PHD_FILE: MSMg01no449_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:24 2005CHROMAT_FILE: MSMg01no449_l09.g1 PHD_FILE: MSMg01no449_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACGACGGC
GCGGAATTCTATTATCTTTTCAAGACTAGTGACCATCCAGATATCTTTGT
ATGTGATATCTGCCACCTACCACATACACATCTAGGTACGAAGCAGTCAG
TAGCTGGCATCTGGCTGGAGGTTTTGTTTTTTAGTTTTAGTTTCTTGTTT
TTGTTTTCGTTTTTGTTTTTATTTTTTTTAACCTGATGTGTGTGTGTGTG
TGTGTGTGTGTTTGTGNGNGNGGNNTGTGTNGTTTGGGTTGTTGGTTGTT
TTTTTTTTTGGGGGAGGAGGTTTGGGTGGGTTTGGGGGTGGGGCGGGCGG
ACGCCCCCCTTTTTTTTCCCCCCCCCTCCTCTCGGGGTTTCTTTGCCCCC
TCTGTTGCCTTTTTCCCCCCCCCCTTCTTTTTTTCTTTTTCTCTTTTTTT
TCTCCTTTTATCATTTTTTCTACGATTCTTCTGTTCGCTACCATTCCCCA
TGTTTTTTTTTTCTCCCTATTTATTTCTTTTTTCTCTTCATCTCCCCTTT
GTTCTTATATTGCTCTCCATTTTTTTGTTTTTACCTCACTTATTATATTT
TTTTCTTCCTTTTTTTATCTTCTCCCTCCTCTTTTTTTTTTTTTTTTCCC
TCATTCTTTTCTTCCTCCTTCTACCCCTTTTTTTTTTTTTTTTCACTCCG
CCTCCTTCCTTACTTCGTCCTTTGTCTCTTTCCCCCTCTTTCTCCTCCCC
TTTTATCCTCCTCTTCTTCCTTN
NCCTTCGATGATGTGGGAGGCCTGGNGGNCGCCTGGTTTCAAACAGGAGG
NGAACTATAGAAGGTTACAAAAAATCGATAATACAATTTCTGTGGAGAAA
ACCATGAAAAGATCTTATCCCTTTACATGTTTCTTTACATGGTCATGCAT
TATTTTTTTAAATACAGTGATATATAGGAAATTATCCAAGAAATTTTTAA
TTTTTGAAGAAGAGTAAAATAATTACTGTTAAGCATGTGAAAGAGAGGAT
ATATTTTGAGATTGCACATGAGGAGAGATGTAGAATCTAATTGGAAGATG
AGTCAATCATTCAATTATTTAAATAGCTTGAAATATATGAATATAAAAGA
GAAATAATAATTTTGTAAGTAAATCAAAATATTTCAGGAATTACAGTTAA
TGAGAATGGGCAGACCCCTCTGAATAAATGGCATGAAATATCAGAGATGG
TTACATAGAGCAATGCAAATACAAATTAAATGAAACAAGTATCATAACAG
AGAGAAAGAGACATCTATGATAATGAAATAAAATAAACATATAAAGTGTA
TTAGGCAAAGACATCTCTTTTTCTCTACACCATTCTAAAAGGTGCCTATG
AAGCTATAGCTGAAGATAATGAGATTATAATGAATGGGCCCACTTTTCTA
ATACAGTTATTTCTTTTTTTATCTCCCCAATAAGGTTATAAATATCTTTA
CATACCTTCCTACCTATCTACCTACTTACCTACTTGGACCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_l09.g1 MSMg01no449_l09.g1 CHROMAT_FILE:
MSMg01no449_l09.g1 PHD_FILE: MSMg01no449_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:24 2005
         (240 letters)



>mm_chr17_89630977_89631616
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatacaatttctgtggagaaaaccatgaaaagatcttatccctttacatgtttcttta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 ataatacaatttctgtggagaaaaccatgaaaagatcttatccctttatatgtttcttta 381

                                                                       
Query: 61  catggtcatgcattatttttttaaatacagtgatatataggaaattatccaagaaatttt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catggtcatacattatttttttaaatacagtgatatataggaaattatccaagaaatttt 321

                                                                       
Query: 121 taatttttgaagaagagtaaaataattactgttaagcatgtgaaagagaggatatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatttttgaagaagagtaaaataattactgttaagcatgtgaaagagaggatatatttt 261

                                                                       
Query: 181 gagattgcacatgaggagagatgtagaatctaattggaagatgagtcaatcattcaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagattgcacatgaggagagatgtagaatctaattggaagatgagtcaatcattcaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)