BAC Information

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BAC

Clone NameMSMg01-450A14
Chromosome17 (Build37)
Map Location 17,986,310 - 17,986,556
singlet/doubletsinglet
Overlap geneHas1
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450A14.T7 (MSMg01no450_a14.b1)MSMg01-450A14.TJ (MSMg01no450_a14.g1)
ACCAG537863AG537864
length788767
length of high quality
(start - end)
57 (250 - 306)247 (79 - 325)
definitionCHROMAT_FILE: MSMg01no450_a14.b1 PHD_FILE: MSMg01no450_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:49 2005CHROMAT_FILE: MSMg01no450_a14.g1 PHD_FILE: MSMg01no450_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCACATATTTGCGGTCGTTATACGAGTCACTTTCCAAAGAGGATCCGC
GGAATTCAGTTTTCCACATGATATAATAAAAGCAATACAAAGCAAGCCAA
TATCCAACATCAAACTAAATGGACAGAAACATAAAGCAATCCCATTAAAA
TCATGAACAAGGTAAGGCATTCTCTCTCGACCTATTCAATATAGCACTTA
AAGTTCTAGCCACAATAATTAAACAACCAACAGAGATCATAGGGATACAA
ATTTGGAGGGATGAACTCATGATATTCCTATTTGCAGATGATAGTGTAGA
TAAGTAACCCTCATAATTCTATTAGAGTGCTCCTACCGATGGTAAACTAC
TTCAGCAAAGCAGCTGGATGAATATCAACTCTAACAAATCAATAGCCTTC
CTCTACTCAAAGGATAACAAGTCTCAGAAAGAAATCACCGAAACAGCATT
CTTCACCATATTCCCTATCTATTATAACATATCTTGGTCGTGTCTCATCA
CCAATCAAGTGTAAGATTCACATGACAACAACTTTCTTATCCTCGCATAC
CTGATTCCTTACATACCTTACCCATGGACTGTTCCCCTTCGTCTATTGCA
TTCGCTTACTCTTTCTATCTCCAATCCTCGTCCTTCTTCATTTAATTCCC
TTCTACCCCCTTTATCCGCTTTCCCTCTCCTTCCATAATTTCCACTTCCC
TCTTTTTTCCCCCCTCCTATTATTATTACCTTTCCTCTCCCCTATCTCCA
CTCACACTTCCTATCAATCTTATTCCATACCTCCTCCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATGTACCACTGAATGAA
AAAGAATCACATCAAAGGGAGAAAGGACTCATAGCAAATGGATAGATATG
ATTGGCTAAATATCCACATTAAGTCAATTCATCAGTAGTTGGTGAATGAA
TGAATGGATGAATGAATGAGAGTCTGAACGTGTGATGACGAAAGAAGAAA
AGTTTTAATAGCCTGGCAGATAGCTGTGCAGACAAGTGAGTGAGTGCTGT
GCAAGCTTGAGGACCTAGATTTGTANCTACTTCATCCGTGTAAAAGACTA
GGTGTGGCTGCATATGCCTGCCTGCAATATAATGCTGGGGGATGGTAATG
GGAATTGGAGCGCGCGCGCCCNCACACTCTTATTCTTTTTTCCCCCCTCT
TTTCATTACTACAACACTAAATTGACTCTTATCTATATTACATAACGTAT
GTTCTATCGCCCCCTTTTCTTTATTTTCCTTCTCCTCTCATTTTTTTATT
CTCCGTTTCCCTCCTTTTCAATATCTCGCCCCTGCACGCTACTTTACTCT
TTTTATTTCCCCTTTTTCCTCCCCCTTTCCGTTAATTTTTCCTCTTTCCC
TTTCCTATGTATCCATCCCTTTTTTTTTTCTTTCTTCTATTAACCACCCC
CTTCCTCCCCTCCCTTTCCCCTCCCCCCATTTTTCTCTCCTCCTTTTTTC
CTTTCCCCCTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_a14.g1 MSMg01no450_a14.g1 CHROMAT_FILE:
MSMg01no450_a14.g1 PHD_FILE: MSMg01no450_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:49 2005
         (247 letters)



>mm_chr17_17986110_17986758
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 243/247 (98%), Gaps = 2/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcatagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcatagcaaa 260

                                                                       
Query: 61  tggatagatatgattggctaaatatccacattaagtcaattcatcagtagttggtgaatg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tggatagatatgattggctaaatatccacattaaatcaattcatcagtagttggtgaatg 320

                                                                       
Query: 121 aatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaagttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaagttttaa 380

                                                                       
Query: 181 tagcctggcagatagctgtgcagacaag--tgagtgagtgctgtgcaagcttgaggacct 238
            |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 381 aagcctggcagatagctgtgcagacaagagtgagtgagtgctgtgcaagcttgaggacct 440

                  
Query: 239 agatttg 245
           |||||||
Sbjct: 441 agatttg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 649
Length adjustment: 9
Effective length of query: 238
Effective length of database: 640
Effective search space:   152320
Effective search space used:   152320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)