Query= MSMg01no450_f05.b1 MSMg01no450_f05.b1 CHROMAT_FILE:
MSMg01no450_f05.b1 PHD_FILE: MSMg01no450_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:12 2005
(249 letters)
>mm_chr17_65831110_65831758
Length = 649
Score = 385 bits (199), Expect = e-111
Identities = 226/249 (90%), Gaps = 22/249 (8%)
Strand = Plus / Plus
Query: 1 ggcactttgggactcagggcatgctatttccactgattagtttgtattcgctcaaaagag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggcactttgggactcagggcatgctatttccactgattagtttgtattcgctcaa----- 277
Query: 61 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 120
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 -----------------gagagagagagagagagagagagagagagagagagagagagag 320
Query: 121 ctagcttttaaattgtggtgtcatggctgagagtccactgaacgttctggtctacagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcttttaaattgtggtgtcatggctgagagtccactgaacgttctggtctacagtat 380
Query: 181 ttgtctaggttttcaaaacatctcctgctgaaatggtaagttatttcagttccccgtgac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtctaggttttcaaaacatctcctgctgaaatggtaagttatttcagttccccgtgac 440
Query: 241 acaatgttt 249
|||||||||
Sbjct: 441 acaatgttt 449
Score = 118 bits (61), Expect = 3e-31
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 57 agagagagagagagagagagagagagagagagagagagagagagagagagagaga-gaga 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 74 agagagagagagagagagagagagagagagagagagagagagagagagagagagaggaga 15
Query: 116 gagag 120
|||||
Sbjct: 14 gagag 10
Score = 116 bits (60), Expect = 1e-30
Identities = 63/64 (98%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 58 gagagagagagagagagagagagagagagagagagagagagagagagagagagaga-gag 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 75 gagagagagagagagagagagagagagagagagagagagagagagagagagagagaggag 16
Query: 117 agag 120
||||
Sbjct: 15 agag 12
Score = 110 bits (57), Expect = 6e-29
Identities = 60/61 (98%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 57 agagagagagagagagagagagagagagagagagagagagagagagaga-gagagagaga 115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 68 agagagagagagagagagagagagagagagagagagagagagagagagaggagagagaga 9
Query: 116 g 116
|
Sbjct: 8 g 8
Score = 97.4 bits (50), Expect = 7e-25
Identities = 57/60 (95%), Gaps = 3/60 (5%)
Strand = Plus / Minus
Query: 57 agagagagagagagagagagagagagagagagagagagaga-gagagagagag--agaga 113
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 60 agagagagagagagagagagagagagagagagagagagagaggagagagagaggcagaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 60
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 13
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_f05.g1 MSMg01no450_f05.g1 CHROMAT_FILE:
MSMg01no450_f05.g1 PHD_FILE: MSMg01no450_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:12 2005
(453 letters)
>mm_chr17_65996328_65997180
Length = 853
Score = 806 bits (417), Expect = 0.0
Identities = 446/459 (97%), Gaps = 6/459 (1%)
Strand = Plus / Minus
Query: 1 tacagcgagaaagtaggacaagcagtatccacgctgagacctatcctattttgaaaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tacagcgagaaagtaggacaagcagtatccacgctgagacctatcctattttgaaaccat 678
Query: 61 tgtcacatctcaggggga------ttttttttttttttgcccagggagctaagggttaat 114
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtcacatctcagggggattttttttttttttttttttgcccagggagctaagggttaat 618
Query: 115 caggtctgactggaagagcagactggccctattaaaagggactttgctgtcttgactcac 174
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617 caggtctgactggaattgcagactggccctattaaaagggactttgctggcttgactcac 558
Query: 175 tggctggtctgattcttccagaaggtcggcgtgtcttcccccttgtccttgatgttgagg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggctggtctgattcttccagaaggtcggcgtgtcttcccccttgtccttgatgttgagg 498
Query: 235 tagaaaccactgtttatccctctgtgacgttctcaatgccttggaaacagtgcatgcgcc 294
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagaaaccactgcccatccctctgtgacgttctcaatgccttggaaacagtgcatgcgcc 438
Query: 295 tgggttcagccatctagactttgtggggtccaaggccctgacctgctgataacctagtgc 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 tgggttcagccatctagactttgtggggtccgaggccctgacctgctgataacctagtgc 378
Query: 355 tcaacctggctatatgccagtgagcctggatgagtgttctctgaatcagcacccttctcc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcaacctggctatatgccagtgagcctggatgagtgttctctgaatcagcacccttctcc 318
Query: 415 ctagatctacaaggaccagtctctctatttgtttgaaaa 453
|||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctagatctacaaggaccagtctctctatttgtttgaaaa 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
