BAC Information

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BAC

Clone NameMSMg01-450N12
Chromosome17 (Build37)
Map Location 89,691,124 - 89,691,404
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N12.T7 (MSMg01no450_n12.b1)MSMg01-450N12.TJ (MSMg01no450_n12.g1)
ACCAG538473AG538474
length755734
length of high quality
(start - end)
281 (325 - 605)506 (82 - 587)
definitionCHROMAT_FILE: MSMg01no450_n12.b1 PHD_FILE: MSMg01no450_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005CHROMAT_FILE: MSMg01no450_n12.g1 PHD_FILE: MSMg01no450_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGATCCGCNG
GAATCAGTGTTGCCTAACAAACCTGATGCTCCATGATTACAGCCCAAATG
GGAGGCAACATCTAACTAGACTGATGAATACATCTATAGTGTAGTGACAG
CTCATGATCCACTAAAATGCATATGTTCATGGAGAATAGTCTGTATTGTC
TCACTTCATACATCTAACTGTATTCTGAGCTTTGTGAGAAGAAATATTTG
AAGACACTCTACTGTTTTAAGGTTTTCTGTTTCTTACTTTCAACATGTAG
TTAAGAATAATTCTTAGATAACCTCACTAATACATCACTATCCTTCACCA
GAGCTAACCCAGTATTCAGTTTAGGTTTGAATTGAAATGTTTTTAAAAAA
GGTAAAGGAATCAAGATAACAATTTCTTTTCCCATTAACCTCAAGGGCAC
CTTCTTTTGTGTTTAGTTTTCTTTGGATAAGAGCACATTATAATCTTCAT
TTTTAATTAGGGTTTAAAGCATATTTTGTCTCCCAGTTAAAGGATCTTAT
TCATGTTGAACGGAGAAAATGACCAACCTTAAGGATATGAGCTTCTGACT
GAAGCCATGGATCTAAGCTATCAGGTAACACCATCTAAGATATGTTACAT
CTGTTACATATGCTAATGTAGTTTCCCAATTTCCCCTAACAGGCATCTTC
TCTTCTTTTTCAGGTTAGTTGACAGAATAACTCTTAACTGGCTTTAATTT
CCCCC
CCCTTTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAAACACACAACTAA
AGTGATAATATGTTTACAACAACCTGTAAGATTAAAAACAAAACAAAATA
AAAAAACCTGTCTGACATTATGAGACAAAAAAACCTCTAAAAATCCCACT
GAATTTGTTTTGTGTTCGCCATTTACTGCTGGGCTTGAGCCCTATCTTAA
AGAGTGTCTTGTTTCTCCAGTGAACTCCCTTAGAGATAGCTACTTTTTTT
ATTTGCAAGTGGTTATCAAGCCTTTATATTTTGGGAGTGGGGCATGTGCT
CATTCTCTCAGCTATAGGATCCAATTGGATACAGACACATGCAGGCCCTG
TGCTTATTCTCAGTCTCTGAGAGTCCATATGTGCATTGCTCCATCTCCTC
TTCTACTTCTGTGACTCATGACAGGTGGGGATTTGATGGAGATGTCCAAT
TTATGGCTGAGTGTCACTTTCTGCACATTGTCTGGCTGTGGAAATTTGTA
CTTGATCCCATATGCTGCAGGAGGAAGTTTCCTTGGTTGGGCAAGACACA
GATCTACGAGTTTATAAGAATGTCAGCAGAAAGCATTTTGTTGCTATATT
CCTTTAGCAGAATAGTGTTATTCGGGTTCCTTCCAGATCCCTGCCCTGTT
AAACTCTAGTTTGTACCCACCCAACCTGTGTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n12.b1 MSMg01no450_n12.b1 CHROMAT_FILE:
MSMg01no450_n12.b1 PHD_FILE: MSMg01no450_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:54 2005
         (281 letters)



>mm_chr17_89690924_89691604
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactaatacatcactatccttcaccagagctaacccagtattcagtttaggtttgaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactaatacatcactatccttcaccagagctaacccagtattcagtttaggtttgaattg 260

                                                                       
Query: 61  aaatgtttttaaaaaaggtaaaggaatcaagataacaatttcttttcccattaacctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtttttaaaaaaggtaaaggaatcaagataacaatttcttttcccattaacctcaa 320

                                                                       
Query: 121 gggcaccttcttttgtgtttagttttctttggataagagcacattataatcttcattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcaccttcttttgtgtttagttttctttggataagagcacattataatcttcattttt 380

                                                                       
Query: 181 aattagggtttaaagcatattttgtctcccagttaaaggatcttattcatgttgaacgga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattagggtttaaagcttattttgtctcccagttaaaggatcttattcatgttgaacgga 440

                                                    
Query: 241 gaaaatgaccaaccttaaggatatgagcttctgactgaagc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatgaccaaccttaaggatatgagcttctgactgaagc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)