BAC Information

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BAC

Clone NameMSMg01-450N17
Chromosome17 (Build37)
Map Location 37,841,370 - 37,841,663
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119
Downstream geneScocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N17.T7 (MSMg01no450_n17.b1)MSMg01-450N17.TJ (MSMg01no450_n17.g1)
ACCAG538483AG538484
length771783
length of high quality
(start - end)
567 (44 - 610)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no450_n17.b1 PHD_FILE: MSMg01no450_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:55 2005CHROMAT_FILE: MSMg01no450_n17.g1 PHD_FILE: MSMg01no450_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCCCTTCTGAGCACCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTGCACCTTTTTGAGTTCTTTATATATATTGTATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAACTACTTTCTCAATCTGTTGCTGGTCTTTA
TGTCTTATTGACGGTGTCTTTTGCCTTGTAGAAGCTTTGCAGTTTCATGA
GGTCCCATTTGTCAATTCTCAATTTTACAGCAAAAGTTATTGCTGTTCTA
TTCAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGATCAATTCACATT
CTTCTACATGATAACAACCAGTTTTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCCAAGATCAAGTGAC
CATAGGTGTGTAGGTTCATTTCTGGGTCTTACATTCTATTCCATTGGTCT
ACTTGTCTGTCACTATACAAGTACCATGCAGTTTTTATCACAATTGCTCT
GTATTAAAGCTTTAGGTCCAGCATGGTGATTCCACCCGGAGGTTCTTTTA
TCCTTGATAAGAGTTTTTGCTATCTTACGTTTTTTGGTATCTCCGATGAA
TTTCCAAATGGCCCTTCAACN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATGATTTTGGAAGCTAGGAGGA
ATGAGTTGTGAAAAGGAATATTGTAGGTCTATATGATCTGTTGGAATTGG
GTGTCAGTAACTGCAGGATGTGTTCTGATACAAAAATGGGGATGAGGTAT
TGATCTTCGAGGAATGGAGGGAGATGTGTTGATTTTCAGGGCAAAGGATG
GGGTTGAGAGGTGACAGTATTCCATGATGAATCCCAGGAATTCAGACTCC
AGGGACCACCAACAGGGTGTTTTTATGGATTTATTTTCCAGCATACTTGA
ATATATACAGTGTTTGAGACCATATAAAGTCTCTATATCCACAGGCAATT
GTATCTTACTACACCTTCACTATACCCCATTGACAGGTTTACCTGATGAG
ATCCCACATAAGGATCCTTATTTGCTCACCACCGCGTTTTGCTATTCCTC
AGTTTCCTTCTGCTCCCACTACCTTCCTTTCCTTCCCATCTTTCCGCTAT
TTTTTGCTTCCTGTCCCACACCTCTCCTTTCTTTTTTTTTCTACCTTTTT
TTCTATTCTTCTTTACTATCCTGCTTGCCTCCCCCCCCCTTTTTTTTCCT
CCCCATTTCCTTTTTTTTTTCTCCCTCTCTCCTTGCGCCCGTCTTCTTTT
CCCCCCTTTTCCTCGTTTCCTTCCCTCTCTTTCTTTCTCACTTATCCCCC
GCCCTACTCTACTTCCCTCCCCCCCCTCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n17.g1 MSMg01no450_n17.g1 CHROMAT_FILE:
MSMg01no450_n17.g1 PHD_FILE: MSMg01no450_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:55 2005
         (294 letters)



>mm_chr17_37841006_37841699
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgattttggaagctaggaggaatgagttgtgaaaaggaatattgtaggtctatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctgatgattttggaagctaggaggaatgagttgtgaaaaggaatattgtaggtctatatg 599

                                                                       
Query: 61  atctgttggaattgggtgtcagtaactgcaggatgtgttctgatacaaaaatggggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atctgttggaattgggtgtcagtaactgcaggatgtgttctgatacaaaaatggggatga 539

                                                                       
Query: 121 ggtattgatcttcgaggaatggagggagatgtgttgattttcagggcaaaggatggggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggtattgatcttcgaggaatggagggagatgtgttgattttcagggcaaaggatggggtt 479

                                                                       
Query: 181 gagaggtgacagtattccatgatgaatcccaggaattcagactccagggaccaccaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gagaggtgacagtattccatgatgaatcccaggaattcagactccagggaccaccaacag 419

                                                                 
Query: 241 ggtgtttttatggatttattttccagcatacttgaatatatacagtgtttgaga 294
           ||||  | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 418 ggtgcatatatggatttattttccagtatacttgaatatatacagtgtttgaga 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)