BAC Information

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BAC

Clone NameMSMg01-451C06
Chromosome17 (Build37)
Map Location 52,219,171 - 52,219,481
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451C06.T7 (MSMg01no451_c06.b1)MSMg01-451C06.TJ (MSMg01no451_c06.g1)
ACCAG538701AG538702
length733881
length of high quality
(start - end)
311 (71 - 381)---
definitionCHROMAT_FILE: MSMg01no451_c06.b1 PHD_FILE: MSMg01no451_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:17 2005CHROMAT_FILE: MSMg01no451_c06.g1 PHD_FILE: MSMg01no451_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATGTTTTTAATTTGGGGCGCTATACGACTCACTTTTCCAGAGGATCCG
CGGAATTCAAATGTTTACGTGTGTGAGTGATGCACTTTAACCTGCACAGC
CAGACCACCGGCCCAAGAAATTCTACCTCTGAGGTTTTCCCAAAGCTGCT
CACTGCAGAGATCAATAGCTTTTCATGACAGTCACTGGACATTTACCACC
TTGAGTTTATGCCAGTTGCATTTCTATCCCAACATAGGACAATTACCCTA
GAGTCACAGATGAGGAAGGACCATCACTGCCTATCACAGATCACAGGCAA
GGACGTACTTTTGCCCATTATGGATACTGGATACTAGGAAAAGAATGGAC
ATCACAAGTAAGGACGGATCATAGTCCATCACGCTAGGAAGAAAGCGGAA
GGAAGGAGGACTCTGAGTTTCTCCCTACAATATGACTAATGAGGTTTCTA
GGTCCAAATGTGGACTGCCTTAATTTTAATGGCATCCATCTGAGCACAAT
AAAGTCACTCAACAGATGCTGGTTACATATAGATCTATGTGCTAATCCAT
AAGATATTCTCATAGTAATCTCATGATATAGGGGTCAAGGCATTAATGAG
AAACATCTAAGCCTTGGTACTTTGTGGCCAATTTGTGTAGAGAAACCTAC
CCGGAAGCTTATGTTTTTAGAAATAAAAAGCTTAAAAAGTCCCTGGCATA
ATTATGAGTGTCATTTAGATTACCGGCGAATCN
CCACACCAACTTCAGATTAGAAAAGAGCACAGACGAAAGACTCCCTAAGA
GAGGGCCGATAAGCGGGAGGATCCTCGTGCCGCGGGTGGGGGTGGGAGCT
CAAAAATCGAACCCCAAATGTTTATTGAGAGCAAGGTAACTGCATAACTG
CGCACAGGGCTATCAACACGATCACGAAGCGACGAATGGGTTAACGCTTC
GCCGGCAATATATATTCCGCCGCTACATTCAATAAACATCGTTTGTGTGT
CAGTAGTGCCATACTACGCACTTCGCATGAATACATACGAAACATAACTA
CTAGAAATTCAGCTCCGTACTAGTGGAGTTAGGGCCCGGCGGAAATGGAG
GAACTCTGTGTACCTTCGTTAATTTTACTAGCTCTCTCAATGCGTTTATA
CATCCATCCTACCCCTAATGTACACAATGGGGGGGTTAAGGTCACTGGGN
NCGGGGCCGGCCTTGGTCCGAACATACAGTGGTAGGGTTGGAACACTATT
AGTATTTGACACACAGCGAGGAGATTTCAGGTTTGAAGGAAAAGGAAAGT
TCCAATTTTAATGTTTGGGTTACCCCACAAGGAACCAACTTTCCCATGGC
TTTTAAGAAATAGGGGCCAATTGGGCCCAGGTCCATCCCTCCAAAGGACT
CGGCCTTTGGGCCCCCGGCGGGGGGAAGGGGGTGTCCAACCCCCCGGGCC
AAAAAAAAAAACCCCCCACCCCCCACGTGGGGGGAGAGGGGGGTTCCCCC
CATACACAAAATGGGGTCCCCCAGGGGGAAACAAAAAAAAAAAAAAGTTT
GGGCCGGGGGGGCGCCCCCAAAAAAAGGACGCCCCGCCACCCCCCCCCCC
CAAAAGAAAAAGAAAACCCCCCTCCGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_c06.b1 MSMg01no451_c06.b1 CHROMAT_FILE:
MSMg01no451_c06.b1 PHD_FILE: MSMg01no451_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:17 2005
         (311 letters)



>mm_chr17_52218971_52219681
          Length = 711

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgagtgatgcactttaacctgcacagccagaccaccggcccaagaaattctacctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 511 gtgtgagtgatgcactttaacctgcacagccagaccaccggcccaagaaatcctacctct 452

                                                                       
Query: 61  gaggttttcccaaagctgctcactgcagagatcaatagcttttcatgacagtcactggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaggttttcccaaagctgctcactgcagagatcaatagcttttcatgacagtcactggac 392

                                                                       
Query: 121 atttaccaccttgagtttatgccagttgcatttctatcccaacataggacaattacccta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 atttaccaccttgagtttatgccagttgcatttctatcccaacagaggacaattacccta 332

                                                                       
Query: 181 gagtcacagatgaggaaggaccatcactgcctatcacagatcacaggcaaggacgtactt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagtcacagatgaggaaggatcatcactgcctatcacagatcacaggcaaggacgtactt 272

                                                                       
Query: 241 ttgcccattatggatactggatactaggaaaagaatggacatcacaagtaaggacggatc 300
           ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 271 ttgcccagtatggatcctggatactaggaaaagaatggacatcacaagtaaggaaggatc 212

                      
Query: 301 atagtccatca 311
           |||||||||||
Sbjct: 211 atagtccatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)