BAC Information

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BAC

Clone NameMSMg01-451G10
Chromosome17 (Build37)
Map Location 77,182,041 - 77,182,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G10.T7 (MSMg01no451_g10.b1)MSMg01-451G10.TJ (MSMg01no451_g10.g1)
ACCAG538899AG538900
length749752
length of high quality
(start - end)
654 (96 - 749)599 (78 - 676)
definitionCHROMAT_FILE: MSMg01no451_g10.b1 PHD_FILE: MSMg01no451_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:38 2005CHROMAT_FILE: MSMg01no451_g10.g1 PHD_FILE: MSMg01no451_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCTTTGTACAATAATACATATTTTCTTGGAGTTTAAATCAT
CTGTATGGTTGTAAGGATTATATGACTTAGTAATAATAGCTAGCATTGAA
TTATTGGTACATTCATTCAACAAACTGCCATTTTAATATGTGCCAGTACA
ATGCTACAAATATGTGGAAGGAATTTTGACCTAAAAGAAGGATTCAGATG
AGTAAGGGGGAAATAATAACCTCAGGCAGTAGGAGATAGTGGTGAAGTAA
TACACTGAGTTGTGATCAGTACTTAGTGTTTACCATGTGCATAGAAAGGT
GATATTTTGACAGGCTGCTCACACTGGCTGACTGAGATCCTGTGTATTTA
AATGTGGCTGGAAAAAAATGGGAAACAATGATTCACTACCAATGACTCCT
GCAGAAACTGAACACCAAGATAAGCTGAAATTTTCAGTAGTTTGGATTCA
GTGAACTGAGTGTTGAGTAGCCAGAAAGAGGAGGAGCAGATAGCAATTAC
TGTGAAGAGAGGAGGCTAAAAGGCCAAGATTAGCAGAACATGACAGTGAG
AACTCAGGCATTGGGACAGTAGAATGGAGCCAAGCATCAGAGAGAGAGAG
AGAGAGACAGAGACTGAGACAGAGACTGAGACAGAGACAGAGACAGAGAG
GTGTTCCTGCAGACAGGAAACATTATGAGACTCAGAACTGATGATATAN
CCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAACGAATGGC
AGAGAAGCACCTGANAAAATGTTCAACATCCTTAATCATCAGTGAAATGC
AAATCAAAACAACTCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTTAGGTGACAGCAGATGCTGGCGAGGATGTGTAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCTGTCTGGCGGTTCCTCAGAAAATTGGACTTAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATACCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACA
GAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTAT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g10.b1 MSMg01no451_g10.b1 CHROMAT_FILE:
MSMg01no451_g10.b1 PHD_FILE: MSMg01no451_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:38 2005
         (654 letters)



>mm_chr17_77181983_77183036
          Length = 1054

 Score = 1147 bits (593), Expect = 0.0
 Identities = 647/687 (94%), Gaps = 34/687 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatctgtatggttgtaaggattatatgacttagtaataatagctagcattgaattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atcatctgtatggttgtaaggattatatgacttagtaataatagctagcattgaattatt 686

                                                                       
Query: 61  ggtacattcattcaacaaactgccattttaatatgtgccagtacaatgctacaaatatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggtacattcattcaacaaactgccattttaatatgtgccagtacaatgctacaaatatgt 626

                                                                       
Query: 121 ggaaggaattttgacctaaaagaaggattcagatgagtaagggggaaataataacctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaggaattttgacctaaaagaaggattcagatgagtaagggggaaataataacctcag 566

                                                                       
Query: 181 gcagtaggagatagtggtgaagtaatacactgagttgtgatcagtacttagtgtttacca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcattaggagatagtggtgaagtaatacactgagttgtgatcagtacttagtgtttacca 506

                                                                       
Query: 241 tgtgcatagaaaggtgatattttgacaggctgctcacactggctgactgagatcctgtgt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgcatagaaaggtgatgttttgacaggctgctcacactggctgactgagatcctgtgt 446

                                                                       
Query: 301 atttaaatgtggctggaaaaaaatgggaaacaatgattcactaccaatgactcctgcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttaaatgtggctggaaaaaaatgggaaacaatgattcactaccaatgactcctgcaga 386

                                                                       
Query: 361 aactgaacaccaagataagctgaaattttcagtagtttggattcagtgaactgagtgttg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 aactgaacaccaagataagctgaaaatttcagtagtttggattcagtgaactgagtgttg 326

                                                                       
Query: 421 agtagccagaaagaggaggagcagatagcaattactgtgaagagaggaggctaaaaggcc 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 agtagccagaaagaggaggagcagatagcaattactgtgaagtgaggaggctaaaaggcc 266

                                                                       
Query: 481 aagattagcagaacatgacagtgagaactcaggcattgggacagtagaatggagccaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagattagcagaacatgacagtgagaactcaggcattgggacagtagaatggagccaagc 206

                                                                       
Query: 541 atcagagagagagagagagaga----------------------------------caga 566
           ||||||||||||||||||||||                                  ||||
Sbjct: 205 atcagagagagagagagagagagagagagagagagagagagagagagagacagagacaga 146

                                                                       
Query: 567 gactgagacagagactgagacagagacagagacagagaggtgttcctgcagacaggaaac 626
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gacagagacagagacagagacagagacagagacagagaggtgttcctgcagacaggaaac 86

                                      
Query: 627 attatgagactcagaactgatgatata 653
           |||||||||||||||||||||||||||
Sbjct: 85  attatgagactcagaactgatgatata 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)