BAC Information

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BAC

Clone NameMSMg01-452A08
Chromosome17 (Build37)
Map Location 67,646,529 - 67,797,159
singlet/doubletdoublet
Overlap genePtprm
Upstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452A08.T7 (MSMg01no452_a08.b1)MSMg01-452A08.TJ (MSMg01no452_a08.g1)
ACCAG539373AG539374
length747746
length of high quality
(start - end)		707 (41 - 747)625 (81 - 705)
definitionCHROMAT_FILE: MSMg01no452_a08.b1 PHD_FILE: MSMg01no452_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:28 2005CHROMAT_FILE: MSMg01no452_a08.g1 PHD_FILE: MSMg01no452_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,796,469 - 67,797,159)(67,646,529 - 67,647,153)
sequence
NCCCTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCCAGTTTCAATTAGGAAGGGACTCACCCTACCTGGATAC
TTTGGATGCTCTCTAGCATGCCACCTTGTGCTGCTAGCTACAAACCGATT
GTGCTAGGCCCAGTTCAAAGATCATGAACACTCATCTTTTCCCTCTTCCA
CCTCCCACGTCCTCACCCCAACGTACCTGCTCCCATCTCCTTACCAGCTG
TGGACCTAGGAGCAGCCTGGAAACACTTCCTACCTTCCCAGGTGAGTTGT
TGCCTCTCTAGCCTGTGCACACGAGAGAAAGAGACTCATGCTACTTCCCC
ATTCATTCTGACCGCCAAGCCTGCATCCCAGGTTAACAGTCCCTTGAGTC
TGTCCTTATAAGCCATCTGTACTGCCTTTGTCAGGCTCTAACTGTAGCAC
CAGGTACTGCATTAACCCCAGTGTCTCTGTAAGCACATGCATGCCCCTAT
GACTGCTCTGGGTTCTTTTCTTCTATTTCCTTTTCTACTCAGACGTTCAA
GGCTGGGGGCTAGGAATATAGCTCCGTTGGTAGATTACTTACCTAGCATG
TACAGAGCCTGGGGACAGTAAAGACTGAGCATGTATAATCTCAGCACATA
GAGGCAGAGCCCTGAGAATCAGAAGTTCGAGGACAACCTCAGCTACAATG
GGAATTCAAACCCTCCTTGGCATACATTGGACCCTGTCTGAAAACCA

NCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCAGGGAAGATAACAG
CGCAAAAGGCTCGGCAGAAAGCTCATGGCTAGAACTGTCAGCCATGGTCT
GACTTGGGCTCTCAGCGTGGGACGTTGGGACTGCATACATGACAAGCTCA
TAGATAACCTGACCTCTTTGTTCACAACACTACTGGCTACTTGTCCTGTG
AGACAGCAGAAAACTGATGTGACCAATGTGCTTTCCTTCCACACACACTC
TCCTGGCCACACCCCCTTCCAGGCTGCCAGCCGCGGCCATCAGAAAACCT
TGGGGACAAGATTGTGAAATGGGAATTTTTCTTCACACTTAGTTTTATGT
AACAGACTCATGATCTTCAAAGCCAGATAAAGCCCCGACATTGCTGAGCC
CTTTGAAATGAAGGCGATATTTTGTGTACCGTGCTATCTGAATGGATGGA
ATGAGAAAACGACCTCATCTAACATAAACCTACCACGAAGACTTGCCTTG
GAGCGAATAAAGCCCTTAACAGGTACAGTTATTACTCTCTCTAGGAATCA
ACTTCGAAGATGATAGGATGGTCAAAGCCCAAGTGCCTTGCTGGAGGCTC
TCATTTCGGCCTCCCAATGGGAGGGATCTCTTCTGCCTTACAGGAAAATG
AAGCTGAAAGTCTGTGTGAGCAGATTCAGGCTCACACAGTCGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_a08.b1 MSMg01no452_a08.b1 CHROMAT_FILE:
MSMg01no452_a08.b1 PHD_FILE: MSMg01no452_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:28 2005
         (707 letters)



>mm_chr17_67796445_67797551
          Length = 1107

 Score = 1336 bits (691), Expect = 0.0
 Identities = 691/691 (100%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattccagtttcaattaggaagggactcaccctacctggatactttggatgctctctag 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattccagtttcaattaggaagggactcaccctacctggatactttggatgctctctag 656

                                                                       
Query: 77  catgccaccttgtgctgctagctacaaaccgattgtgctaggcccagttcaaagatcatg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 catgccaccttgtgctgctagctacaaaccgattgtgctaggcccagttcaaagatcatg 596

                                                                       
Query: 137 aacactcatcttttccctcttccacctcccacgtcctcaccccaacgtacctgctcccat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aacactcatcttttccctcttccacctcccacgtcctcaccccaacgtacctgctcccat 536

                                                                       
Query: 197 ctccttaccagctgtggacctaggagcagcctggaaacacttcctaccttcccaggtgag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctccttaccagctgtggacctaggagcagcctggaaacacttcctaccttcccaggtgag 476

                                                                       
Query: 257 ttgttgcctctctagcctgtgcacacgagagaaagagactcatgctacttccccattcat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttgttgcctctctagcctgtgcacacgagagaaagagactcatgctacttccccattcat 416

                                                                       
Query: 317 tctgaccgccaagcctgcatcccaggttaacagtcccttgagtctgtccttataagccat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctgaccgccaagcctgcatcccaggttaacagtcccttgagtctgtccttataagccat 356

                                                                       
Query: 377 ctgtactgcctttgtcaggctctaactgtagcaccaggtactgcattaaccccagtgtct 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgtactgcctttgtcaggctctaactgtagcaccaggtactgcattaaccccagtgtct 296

                                                                       
Query: 437 ctgtaagcacatgcatgcccctatgactgctctgggttcttttcttctatttccttttct 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgtaagcacatgcatgcccctatgactgctctgggttcttttcttctatttccttttct 236

                                                                       
Query: 497 actcagacgttcaaggctgggggctaggaatatagctccgttggtagattacttacctag 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 actcagacgttcaaggctgggggctaggaatatagctccgttggtagattacttacctag 176

                                                                       
Query: 557 catgtacagagcctggggacagtaaagactgagcatgtataatctcagcacatagaggca 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 catgtacagagcctggggacagtaaagactgagcatgtataatctcagcacatagaggca 116

                                                                       
Query: 617 gagccctgagaatcagaagttcgaggacaacctcagctacaatgggaattcaaaccctcc 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gagccctgagaatcagaagttcgaggacaacctcagctacaatgggaattcaaaccctcc 56

                                          
Query: 677 ttggcatacattggaccctgtctgaaaacca 707
           |||||||||||||||||||||||||||||||
Sbjct: 55  ttggcatacattggaccctgtctgaaaacca 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no452_a08.g1 MSMg01no452_a08.g1 CHROMAT_FILE:
MSMg01no452_a08.g1 PHD_FILE: MSMg01no452_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:28 2005
         (625 letters)



>mm_chr17_67646329_67647353
          Length = 1025

 Score = 1131 bits (585), Expect = 0.0
 Identities = 615/625 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagccagggaagataacagcgcaaaaggctcggcagaaagctcatggctagaactgtca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 201 tcagccagggaagataacagcgcaaaaggcttggcagaaagctcatgactagaactgtca 260

                                                                       
Query: 61  gccatggtctgacttgggctctcagcgtgggacgttgggactgcatacatgacaagctca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatggtctgacttgggctctcagcgtgggacgttgggactgcatacatgacaagctca 320

                                                                       
Query: 121 tagataacctgacctctttgttcacaacactactggctacttgtcctgtgagacagcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagataacctgacctctttgttcacaacactactggctacttgtcctgtgagacagcaga 380

                                                                       
Query: 181 aaactgatgtgaccaatgtgctttccttccacacacactctcctggccacacccccttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgatgtgaccaatgtgctttccttccacacacactctcctggccacacccccttcc 440

                                                                       
Query: 241 aggctgccagccgcggccatcagaaaaccttggggacaagattgtgaaatgggaattttt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctgccagtcgcggccatcagaaaaccttggggacaagattgtgaaatgggaattttt 500

                                                                       
Query: 301 cttcacacttagttttatgtaacagactcatgatcttcaaagccagataaagccccgaca 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cttcacacttagttttatgtaacagactcacgatcttcaaagccagataaagccccgaca 560

                                                                       
Query: 361 ttgctgagccctttgaaatgaaggcgatattttgtgtaccgtgctatctgaatggatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ttgctgagccctttgaaatgaaggcgatattttgtgtaccgtgctttctgaatggatgga 620

                                                                       
Query: 421 atgagaaaacgacctcatctaacataaacctaccacgaagacttgccttggagcgaataa 480
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 621 atgagaaaacgacctcatctaacacaaacctaccacgaagacttgccttggagcaaataa 680

                                                                       
Query: 481 agcccttaacaggtacagttattactctctctaggaatcaacttcgaagatgataggatg 540
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 agcccttaacaggtgcagttattactctctctaggagtcaacttcgaagatgataggatg 740

                                                                       
Query: 541 gtcaaagcccaagtgccttgctggaggctctcatttcggcctcccaatgggagggatctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcaaagcccaagtgccttgctggaggctctcatttcggcctcccaatgggagggatctc 800

                                    
Query: 601 ttctgccttacaggaaaatgaagct 625
           |||||||||||||||||||||||||
Sbjct: 801 ttctgccttacaggaaaatgaagct 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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