BAC Information

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BAC

Clone NameMSMg01-452H24
Chromosome17 (Build37)17 (Build37)
Map Location 21,924,012 - 21,924,62722,474,981 - 22,475,509
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
Downstream gene4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H24.T7 (MSMg01no452_h24.b1)MSMg01-452H24.TJ (MSMg01no452_h24.g1)
ACCAG539737AG539738
length779765
length of high quality
(start - end)
620 (46 - 665)522 (75 - 596)
definitionCHROMAT_FILE: MSMg01no452_h24.b1 PHD_FILE: MSMg01no452_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:04 2005CHROMAT_FILE: MSMg01no452_h24.g1 PHD_FILE: MSMg01no452_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:04 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(21,924,012 - 21,924,627)(22,474,981 - 22,475,509)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAACTGTCTGAGACTACCAGAAATAAGAGAAATTCTGATAAT
GAACACTTTTTCTTGGTGCTTCTTTTACATTTTTCTTTTTTCTCTGCAAT
AGTAACCAATGCTATATTCTGTGTAATCTCTTCATCTCTCTTATATAGTT
TTTAAGGAAAACTTCAATGTTGGAAGAAAATTAAAAATTCAGAGCAAGGA
AATGCTTTGCAGTACACTTAATTAATTGGACTATTTTGATTTTCATATTG
AATTAAACAATTCACCTCTTCCTGATTTTTAAAAATTGAGAGGTTTTAAA
ATAAAGAGCTGTTGGTGGTAAGCATGTTGTTCTTTTTGTTTCTTTCTTTA
TTTTTTGACATGTGGTCTCTATAGTCCTGGCACAGCATGATTTTAATCCT
AGCACTAGGGATGTTCAGGCACGAGGATCTGGTGAGTTTCTGGAGAGCCT
GATTTACATAGGGTGTTCCTAGGCAAGAACGCCTACATTATGGACTCTGT
TTCAAAACTATAAACAACAACAGAGAAACACCCTTCATAGGACACTTCAG
AGACCTATGTCTCAAAGTTCATTATTTCTCCATCACCATTTGTCCAACCT
CTGAAAGGTAAGTAGTTTAGATAAGAATGAAGAGACCGTTATTGGTTCTT
TCCATTTGATGGAGATCAGAGTGGAGGATTTTTTCTGAGCTTCCATTTAT
GATAGTGAAACACAGAAGAACTCTGCTGA
TCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTACAACACTTGACGCTCCACACTA
GAGTTAATTATGAATATTAGGAACTTGTGAAAGCATTTTAGTGTTTAAAT
CTTAGAAACTATGAAGCATGTATGCTGGAGAATCTCTGAAAATGTGACAA
TGGAGAAAAATTTTCAAATTGTTCACTAGCAAATATTCCATAATAAAGAC
AAAGTAGAGAAGCCAGAAGAATCTGTAACACTTCTATGGAGACTGAAACA
ATCCATTTGAGAGGAAATCTGATTATGGCGGATAATATGACTCTCAAAAT
AGTGATACCAGTAAGCATTCTGTATTTTTAATTTAAATGAAGAAACTCAG
ACAAATCATATTTGTTAAAAGAGGATTTGATAAACTGAGCCATCAAAATG
CCAGTATTCCTACAGATAGAGATTGCCCTCAGTGTCAAGTATTCATAATC
TGTATCATATGCTGGTTTCAAGTTTCAGGATAGAAACTGTCTTTGAGTCC
CTTGGGCTCTGATCACCAACTCCTTCCCCACAGTCGTGTATATATAACTG
CAATAAATTTCATTGATTGAACAAGTTGGACTTGGTTGTTTTCAGTTTCG
ACTTGGGATANGTAGATGGATATGTGTGTTGGATCTCTGTAGAAAATGGC
TCTCATACAACATGCTTGAACCCATTACTATTTCCTCCCTACTTGTAACA
AAAATTAAAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h24.b1 MSMg01no452_h24.b1 CHROMAT_FILE:
MSMg01no452_h24.b1 PHD_FILE: MSMg01no452_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:04 2005
         (620 letters)



>mm_chr17_21923808_21924827
          Length = 1020

 Score = 1183 bits (612), Expect = 0.0
 Identities = 615/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaactgtctgagactaccagaaataagagaaattctgataatgaacacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaactgtctgagactaccagaaataagagaaattctgataatgaacacttt 264

                                                                       
Query: 65  ttcttggtgcttcttttacatttttcttttttctctgcaatagtaaccaatgctatattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttggtgcttcttttacatttttcttttttctctgcaatagtaaccaatgctatattc 324

                                                                       
Query: 125 tgtgtaatctcttcatctctcttatatagtttttaaggaaaacttcaatgttggaagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtaatctcttcatctctcttatatagtttttaaggaaaacttcaatgttggaagaaa 384

                                                                       
Query: 185 attaaaaattcagagcaaggaaatgctttgcagtacacttaattaattggactattttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaaaaattcagagcaaggaaatgctttgcagtacacttaattaattggactattttga 444

                                                                       
Query: 245 ttttcatattgaattaaacaattcacctcttcctgatttttaaaaattgagaggttttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcatattgaattaaacaattcacctcttcctgatttttaaaaattgagaggttttaa 504

                                                                       
Query: 305 aataaagagctgttggtggtaagcatgttgttctttttgtttctttctttattttttgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataaagagctgttggtggtaagcatgttgttctttttgtttctttctttattttttgac 564

                                                                       
Query: 365 atgtggtctctatagtcctggcacagcatgattttaatcctagcactagggatgttcagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtggtctctatagtcctggcacagcatgattttaatcctagcactagggatgttcagg 624

                                                                       
Query: 425 cacgaggatctggtgagtttctggagagcctgatttacatagggtgttcctaggcaagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacgaggatctggtgagtttctggagagcctgatttacatagggtgttcctaggcaagaa 684

                                                                       
Query: 485 cgcctacattatggactctgtttcaaaactataaacaacaacagagaaacacccttcata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgcctacattatggactctgtttcaaaactataaacaacaacagagaaacacccttcata 744

                                                                       
Query: 545 ggacacttcagagacctatgtctcaaagttcattatttctccatcaccatttgtccaacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 ggacacttcagagacctatgtctcaaagttcattatttctccatcaccacttgtccaacc 804

                           
Query: 605 tctgaaaggtaagtag 620
           ||||||||||||||||
Sbjct: 805 tctgaaaggtaagtag 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no452_h24.g1 MSMg01no452_h24.g1 CHROMAT_FILE:
MSMg01no452_h24.g1 PHD_FILE: MSMg01no452_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:04 2005
         (522 letters)



>mm_chr17_22474928_22475855
          Length = 928

 Score =  557 bits (288), Expect = e-163
 Identities = 464/538 (86%), Gaps = 31/538 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   caacacttgacgctccacactagagttaattatgaatattaggaacttgtgaaagcattt 64
           |||||||| | |||||||||||||||||||||||||||||| || ||||||||||||  |
Sbjct: 582 caacactttaggctccacactagagttaattatgaatattaagatcttgtgaaagcacct 523

                                                                       
Query: 65  ---tagtgtttaaatcttagaaactatgaagcatgtatgctggagaatctctgaaaatgt 121
              ||||||| ||||| |||||||||| |||||| |||||||||||||  ||||||||||
Sbjct: 522 aagtagtgttcaaatcatagaaactataaagcatttatgctggagaatgactgaaaatgt 463

                                                                       
Query: 122 gacaatggagaaaaattttcaaattgttcactagcaaatattccataataaagacaaagt 181
           ||||||| ||||||||||||||| |||| |||| ||||| ||||||||| ||||||||| 
Sbjct: 462 gacaatgaagaaaaattttcaaaatgtttactatcaaatgttccataatgaagacaaaga 403

                                                                       
Query: 182 agagaagccagaagaatctgtaacacttctatggagactgaaacaatccatttgagagga 241
           |||||||||| ||||||||||||||||| | ||||||| |||| ||||||||  ||||||
Sbjct: 402 agagaagccacaagaatctgtaacacttttgtggagacggaaataatccattacagagga 343

                                                                       
Query: 242 aatctgattatggcggataatatgac-tctcaaa----atagtgataccagtaagcattc 296
           ||||||||||||| ||||||||  || |||||||    ||||||| |||| | |||||||
Sbjct: 342 aatctgattatggtggataata-cacttctcaaaatagatagtgacaccaat-agcattc 285

                                                                       
Query: 297 tgtatttttaatttaaatgaagaaactcagacaaatcatatttgttaaaagaggatttga 356
           ||||| ||||| | ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 284 tgtatgtttaactcaaatgaagaaactcagaaaaatcatatttgttaaaagagggtttga 225

                                                                       
Query: 357 taaactgagccatcaaa--------------atgccagtattcctacagatagagattgc 402
           |||||||||||| ||||              ||||||||||||||||||||| || ||||
Sbjct: 224 taaactgagccaccaaaatggaatgctcttcatgccagtattcctacagatacagtttgc 165

                                                                       
Query: 403 cctcagtgtcaagtattcataatctgtatcatatgctggtttcaagtttcaggatagaaa 462
           |||||||     ||||||| ||||||||||  ||||||||||||||||||||||||| ||
Sbjct: 164 cctcagt-----gtattcaaaatctgtatc--atgctggtttcaagtttcaggatagcaa 112

                                                                     
Query: 463 ctgtctttgagtcccttgggctctgatcaccaactccttccccacagtcgtgtatata 520
            ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 111 gtgtctttgagtcccttgggctctgatcaccaactccttccccatagtcctgtatata 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 928
Length adjustment: 10
Effective length of query: 512
Effective length of database: 918
Effective search space:   470016
Effective search space used:   470016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)