Query= MSMg01no452_h24.b1 MSMg01no452_h24.b1 CHROMAT_FILE:
MSMg01no452_h24.b1 PHD_FILE: MSMg01no452_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:04 2005
(620 letters)
>mm_chr17_21923808_21924827
Length = 1020
Score = 1183 bits (612), Expect = 0.0
Identities = 615/616 (99%)
Strand = Plus / Plus
Query: 5 gaattctctgaactgtctgagactaccagaaataagagaaattctgataatgaacacttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaactgtctgagactaccagaaataagagaaattctgataatgaacacttt 264
Query: 65 ttcttggtgcttcttttacatttttcttttttctctgcaatagtaaccaatgctatattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttggtgcttcttttacatttttcttttttctctgcaatagtaaccaatgctatattc 324
Query: 125 tgtgtaatctcttcatctctcttatatagtttttaaggaaaacttcaatgttggaagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtaatctcttcatctctcttatatagtttttaaggaaaacttcaatgttggaagaaa 384
Query: 185 attaaaaattcagagcaaggaaatgctttgcagtacacttaattaattggactattttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaaaaattcagagcaaggaaatgctttgcagtacacttaattaattggactattttga 444
Query: 245 ttttcatattgaattaaacaattcacctcttcctgatttttaaaaattgagaggttttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcatattgaattaaacaattcacctcttcctgatttttaaaaattgagaggttttaa 504
Query: 305 aataaagagctgttggtggtaagcatgttgttctttttgtttctttctttattttttgac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataaagagctgttggtggtaagcatgttgttctttttgtttctttctttattttttgac 564
Query: 365 atgtggtctctatagtcctggcacagcatgattttaatcctagcactagggatgttcagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtggtctctatagtcctggcacagcatgattttaatcctagcactagggatgttcagg 624
Query: 425 cacgaggatctggtgagtttctggagagcctgatttacatagggtgttcctaggcaagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacgaggatctggtgagtttctggagagcctgatttacatagggtgttcctaggcaagaa 684
Query: 485 cgcctacattatggactctgtttcaaaactataaacaacaacagagaaacacccttcata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgcctacattatggactctgtttcaaaactataaacaacaacagagaaacacccttcata 744
Query: 545 ggacacttcagagacctatgtctcaaagttcattatttctccatcaccatttgtccaacc 604
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 ggacacttcagagacctatgtctcaaagttcattatttctccatcaccacttgtccaacc 804
Query: 605 tctgaaaggtaagtag 620
||||||||||||||||
Sbjct: 805 tctgaaaggtaagtag 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_h24.g1 MSMg01no452_h24.g1 CHROMAT_FILE:
MSMg01no452_h24.g1 PHD_FILE: MSMg01no452_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:04 2005
(522 letters)
>mm_chr17_22474928_22475855
Length = 928
Score = 557 bits (288), Expect = e-163
Identities = 464/538 (86%), Gaps = 31/538 (5%)
Strand = Plus / Minus
Query: 5 caacacttgacgctccacactagagttaattatgaatattaggaacttgtgaaagcattt 64
|||||||| | |||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct: 582 caacactttaggctccacactagagttaattatgaatattaagatcttgtgaaagcacct 523
Query: 65 ---tagtgtttaaatcttagaaactatgaagcatgtatgctggagaatctctgaaaatgt 121
||||||| ||||| |||||||||| |||||| ||||||||||||| ||||||||||
Sbjct: 522 aagtagtgttcaaatcatagaaactataaagcatttatgctggagaatgactgaaaatgt 463
Query: 122 gacaatggagaaaaattttcaaattgttcactagcaaatattccataataaagacaaagt 181
||||||| ||||||||||||||| |||| |||| ||||| ||||||||| |||||||||
Sbjct: 462 gacaatgaagaaaaattttcaaaatgtttactatcaaatgttccataatgaagacaaaga 403
Query: 182 agagaagccagaagaatctgtaacacttctatggagactgaaacaatccatttgagagga 241
|||||||||| ||||||||||||||||| | ||||||| |||| |||||||| ||||||
Sbjct: 402 agagaagccacaagaatctgtaacacttttgtggagacggaaataatccattacagagga 343
Query: 242 aatctgattatggcggataatatgac-tctcaaa----atagtgataccagtaagcattc 296
||||||||||||| |||||||| || ||||||| ||||||| |||| | |||||||
Sbjct: 342 aatctgattatggtggataata-cacttctcaaaatagatagtgacaccaat-agcattc 285
Query: 297 tgtatttttaatttaaatgaagaaactcagacaaatcatatttgttaaaagaggatttga 356
||||| ||||| | ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 284 tgtatgtttaactcaaatgaagaaactcagaaaaatcatatttgttaaaagagggtttga 225
Query: 357 taaactgagccatcaaa--------------atgccagtattcctacagatagagattgc 402
|||||||||||| |||| ||||||||||||||||||||| || ||||
Sbjct: 224 taaactgagccaccaaaatggaatgctcttcatgccagtattcctacagatacagtttgc 165
Query: 403 cctcagtgtcaagtattcataatctgtatcatatgctggtttcaagtttcaggatagaaa 462
||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct: 164 cctcagt-----gtattcaaaatctgtatc--atgctggtttcaagtttcaggatagcaa 112
Query: 463 ctgtctttgagtcccttgggctctgatcaccaactccttccccacagtcgtgtatata 520
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 111 gtgtctttgagtcccttgggctctgatcaccaactccttccccatagtcctgtatata 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 928
Length adjustment: 10
Effective length of query: 512
Effective length of database: 918
Effective search space: 470016
Effective search space used: 470016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|