BAC Information

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BAC

Clone NameMSMg01-453H24
Chromosome17 (Build37)
Map Location 35,135,161 - 35,135,783
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2
Downstream geneVars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H24.T7 (MSMg01no453_h24.b1)MSMg01-453H24.TJ (MSMg01no453_h24.g1)
ACCAG540497AG540498
length1,150773
length of high quality
(start - end)
---623 (79 - 701)
definitionCHROMAT_FILE: MSMg01no453_h24.b1 PHD_FILE: MSMg01no453_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:23 2005CHROMAT_FILE: MSMg01no453_h24.g1 PHD_FILE: MSMg01no453_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGTCACCTGTCACCACGCAGATATCTCTTAAGGCGCATCACGCTACA
GATGCAACACGGGACTCCGTACAACGCTGTAACGCGGGCCCCCAAAGCCT
ACACCATTTTCACGCGCGGCATGATATTGAATCAAGGCACAAACACACCG
CCGATGGGTAGAGTTTCTTTATGTTCCACCGCCCTCGATCGGCACCGCCT
CCCAGTACTATGGAGTCTTATCTATATGGTGTGAGGAGAAACTGTCGCCA
CGGAGCACGAATGCGCGCGGGCCGACTATGAAATTGAATAGGCGGAGGGA
GTACATAAAGGCTCCTAGGGGTAAGATCGGACATGTATGACCTACGTGAC
GTGCCGAAGGCGGTGCTATGATGGCTGCGCTCTCTTATACCCTCCACCCA
TTTGCACTATCACAGCCCCCCGCGTTTTGTGTAGCATAATGCGGCCTCGG
ATGAGGAACATCTAGCGGCCCGAAAGGGGGTTAGATCGCCTGACGAGGAC
GAGACCCTGCGACCGAGACAATGAGCAGGGGGAGCACTTCGAATCAGAAA
CCACACACCACAAGTCCGCGTCAGATAGGACTGCGTTCGGCCGTCTTATG
AGTATCGCTGTCAGCCCCTGGATAGACCCTGCGCTCTATTATATATTGCA
CGTTCCGGTCGATACATATCTCTGATTTGTAGGAGTCGATTCGTATATGA
AGATCACCCGTCTAGCCCTGGCGGCGACCATACATAAGTCTTAATGGGTG
TACACGTATCGTTGGCTCCAAAAGACGGAGACGAACTCATTACTCTATAG
GTCGAATATATGCTAGTATACAACTTCTATATTAGGACGGTCCACCCGCG
CGACCCTTTAATTAGGAGGGCGTCGTGTGCGAGCATCGATAGTGCGCAGA
AGGTCTACACAGTATTGTAATCCAGCGCGTATCCGCGTGACGAATCAGAT
ACCGACGAGCGGTAATACGAGGCTGTCTCAATACAGTTGTACCTGCGCAA
AATACGATCTCCACGAACGTTCAACCTGCATGCCGTTACGATATTACATT
CGTTGCCCGCTTGCGCGTGCATGATATGTGTTAATCTACATGGCGCCGCG
CGAATGAGCGCACGCGTCGCACTTGTTCTCTCAGTTCACTAACGTCTCAN

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGGCAAGCTGGACCAGTAC
ACAAAATCCATTTGTGAGGTTAAGAGCCTGGGTGTGGATGCAAGATGTCA
GCCCAGTAGTGCATGCCCACCATGTATTGATGGGGGGTATAATGTAAGCA
TCCCTGTCTGGGGCTTCCTGGATGCTATTACATAAATGTCTATGGGTGTG
GGGTATTGTCCCAAAGCAGAGTCCTTTTCCCTGAATTAGCTCTAAGGTTA
GTCTCCCTTTACCTGGATACTGCCAACGACAGTCCTTGTTGTCAGTAGAG
GTGGTATAATTTCCAGGAACGGCTATTCCTTCATAATAGGGTGGCTGGGC
ATCCAAGCAGAGCCAACATTTACTTGTAAGCTCTGGTTTAGAATTATTCA
ATACCAGGTAAGTGGCCTTAAGCAAGTCCCATGGCCCAGACCTGGGTCTA
AGTTCCTGAGAAATGGGGACTGTGATTTGTGATTGAGTCACCGTGAGTCC
AACAGGGGGCAGGGCTGGATTGGGGCCTAAAGGCATGCCCTGTCGGGCAG
AGAGTTGGATCGTAAACATTACTCCATAGTCATATCCAGACACATACAGT
CTTAGTCCCCATGTCTTTCCCTTTTTCCATCCTACGCTTTCTTTTCCCTT
GGGGGTGAACTGAACTGTAATGTGGTTACAGTTGGAAGAACATGGCCCAC
CAAGATCATTTGCATCCCGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h24.g1 MSMg01no453_h24.g1 CHROMAT_FILE:
MSMg01no453_h24.g1 PHD_FILE: MSMg01no453_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:24 2005
         (623 letters)



>mm_chr17_35134961_35135983
          Length = 1023

 Score = 1197 bits (619), Expect = 0.0
 Identities = 622/623 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggggcaagctggaccagtacacaaaatccatttgtgaggttaagagcctgggtgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggggcaagctggaccagtacacaaaatccatttgtgaggttaagagcctgggtgtgga 260

                                                                       
Query: 61  tgcaagatgtcagcccagtagtgcatgcccaccatgtattgatggggggtataatgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaagatgtcagcccagtagtgcatgcccaccatgtattgatggggggtataatgtaag 320

                                                                       
Query: 121 catccctgtctggggcttcctggatgctattacataaatgtctatgggtgtggggtattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccctgtctggggcttcctggatgctattacataaatgtctatgggtgtggggtattg 380

                                                                       
Query: 181 tcccaaagcagagtccttttccctgaattagctctaaggttagtctccctttacctggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaaagcagagtccttttccctgaattagctctaaggttagtctccctttacctggat 440

                                                                       
Query: 241 actgccaacgacagtccttgttgtcagtagaggtggtataatttccaggaacggctattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgccaacgacagtccttgttgtcagtagaggtggtataatttccaggaacggctattc 500

                                                                       
Query: 301 cttcataatagggtggctgggcatccaagcagagccaacatttacttgtaagctctggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcataatagggtggctgggcatccaagcagagccaacatttacttgtaagctctggtt 560

                                                                       
Query: 361 tagaattattcaataccaggtaagtggccttaagcaagtcccatggcccagacctgggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaattattcaataccaggtaagtggccttaagcaagtcccatggcccagacctgggtc 620

                                                                       
Query: 421 taagttcctgagaaatggggactgtgatttgtgattgagtcaccgtgagtccaacagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagttcctgagaaatggggactgtgatttgtgattgagtcaccgtgagtccaacagggg 680

                                                                       
Query: 481 gcagggctggattggggcctaaaggcatgccctgtcgggcagagagttggatcgtaaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagggctggattggggcctaaaggcatgccctgtcgggcagagagttggatcgtaaaca 740

                                                                       
Query: 541 ttactccatagtcatatccagacacatacagtcttagtccccatgtctttccctttttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 ttactccatagtcatatccagacacatacagtcttagtccccatgtctttcccttttccc 800

                                  
Query: 601 atcctacgctttcttttcccttg 623
           |||||||||||||||||||||||
Sbjct: 801 atcctacgctttcttttcccttg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)