BAC Information

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BAC

Clone NameMSMg01-453M05
Chromosome17 (Build37)
Map Location 21,520,490 - 21,708,302
singlet/doubletdoublet
Overlap geneA830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Upstream geneEG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M05.T7 (MSMg01no453_m05.b1)MSMg01-453M05.TJ (MSMg01no453_m05.g1)
ACCAG540699AG540700
length748745
length of high quality
(start - end)		635 (52 - 686)630 (89 - 718)
definitionCHROMAT_FILE: MSMg01no453_m05.b1 PHD_FILE: MSMg01no453_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:44 2005CHROMAT_FILE: MSMg01no453_m05.g1 PHD_FILE: MSMg01no453_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,707,737 - 21,708,302)(21,520,490 - 21,521,115)
sequence
NTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGGAGAATTAGTTGGAGAAATAGCCTTTCCCAGAGAA
TAGAACATCCAATACCAAATGTTCACCCCTGAAAACATACAGATTGAGTA
GGGTGTATTTTTATGTTTGAGAATCCACACAAACATACAACAATATTTAA
AGGAAAAATTATTTAAAGTAATAAATGTATGTTTAAATTGAAAAATGTGT
ACATACCACATAAAAATGATTAGAAGTCTTTAGACCATTTTCTCTTATTC
CTATGCACAAAAATTACACTTAATATAGGGATAGAGAGATGGCTCAGTAC
TTCCACTGTTTACTGTTCTTGTAGAAATCCAAGTTCCATAACTAGGATCA
ATACATGGTTCCCAACTGCCCATAACTCCAGGTCTAGAATAGATATGATG
CAAGCAAAATACTCATATACATATGACATAAATATCTAAATGGAAAATAG
TACAATGCTTGAGCAATTCCAATGTGATTCCAAATGATCAATGCAAAAGT
GCAGCAGATCCAGAACCTGTCCAGTAGCAATGACCAGGTGAATGTCACCA
AAATATCATAAACATGTGTTGCAGACTAGACAGCCTCTTCACACAGTAGT
ACTGTGAAAAGTATCTATCTGCATATAAAAACATGAACATGGGTCCAAGT
CTCTCTCCTACCATACAAAGAATCAAAGACCTTCATGTAGGATCTGAA

TTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGACTAGTAGC
AAAGGGCTGACCACTGACTTCCCTCAATCTTTTCAAAATCTAAGATACTG
ATATGACCCTCCCTAAGGCAAAAATGCCTTAAGGAAAGACAGCCAGGGCT
GGGGTGAGAGGGACTGTCTTCCACGGGGACGGGCGGGGCCGCTCACCCGG
AAATAGAAGGTGGATGTCCATTGGGTGGTGGTTGCGGAAGTGTATAGAGT
GGGCGTGGTTAGAGGTGTGAAGTAAAAAGATGGTACACTGAGTGAGTGGG
GCCAGACAAGTTGAGCTGAAAAGGCTAAGTCCAAATGGCGAGGGCCCATT
ACCTGAAGGAGCTGTAGGTCTGCATCGTGTGAGATCGAATGGTGCGGAGC
TGAGTATAGAAGACACAGGTTGGGGTCCTGTGAGGACCCAAAAACTCCCC
TATGCCGCAGATGCCTTGAACATCCTGGAGTCAGCAGTCTGTGGCTCAGC
CGGGGAACCGCAGCCCGGCGGCTCTGGAACCTCCCAGGTCAGAGGAGCTG
CGGGGCTGGGAAACTAGGGTCTTGGTGGTGGTTATCCGGGGGGCAGGGAT
ACTGCCTGGCCCAGTGAGAGGGAGAAAAGAGAAAAGTTGAGTGGAGTCTA
CAAAAGTAATTAAGGAAAAGAAAGCCCCGTCCTTTCTTATGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m05.b1 MSMg01no453_m05.b1 CHROMAT_FILE:
MSMg01no453_m05.b1 PHD_FILE: MSMg01no453_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
         (635 letters)



>mm_chr17_21707737_21708771
          Length = 1035

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggagaattagttggagaaatagcctttcccagagaatagaacatccaata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaattcagtggagaattagttggagaaatagcctttcccagagaatagaacatccaata 507

                                                                       
Query: 64  ccaaatgttcacccctgaaaacatacagattgagtagggtgtatttttatgtttgagaat 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcaaatgttcacccctgaaaacatacagattgagtagggtgtatttttatgtttgagaat 447

                                                                       
Query: 124 ccacacaaacatacaacaatatttaaaggaaaaattatttaaagtaataaatgtatgttt 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 ccacacaaacatacaacaatatttaaaggaaaaattatttaaaataataaatgtatgttt 387

                                                                       
Query: 184 aaattgaaaaatgtgtacataccacataaaaatgattagaagtctttagaccattttctc 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 aaattgaaaaatgtgtacataccacataaaaatgattagaaggctttagaccattttctc 327

                                                                       
Query: 244 ttattcctatgcacaaaaattacacttaatatagggatagagagatggctcagtacttcc 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 ttattcctatgcacaaaaattacacttaatatagggatagagagatggctcagtactttc 267

                                                                       
Query: 304 actgtttactgttcttgtagaaatccaagttccataactaggatcaatacatggttccca 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 actgtttactgtt-ttgtagaaatccaagttccataactaggatcaatacatggttccca 208

                                                                       
Query: 364 actgcccataactccaggtctagaatagatatgatgcaagcaaaatactcatatacatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 actgcccataactccaggtctagaatagatatgatgcaagcaaaatactcatatacatat 148

                                                                       
Query: 424 gacataaatatctaaatggaaaatagtacaatgcttgagcaattccaatgtgattccaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gacataaatatctaaatggaaaatagtacaatgcttgagcaattccaatgtgattccaaa 88

                                                                       
Query: 484 tgatcaatgcaaaagtgcagcagatccagaacctgtccagtagcaatgaccaggtgaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tgatcaatgcaaaagtgcagcagatccagaacctgtccagtagcaatgaccaggtgaatg 28

                                      
Query: 544 tcaccaaaatatcataaacatgtgttg 570
           |||||||||||||||||||||||||||
Sbjct: 27  tcaccaaaatatcataaacatgtgttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_m05.g1 MSMg01no453_m05.g1 CHROMAT_FILE:
MSMg01no453_m05.g1 PHD_FILE: MSMg01no453_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
         (630 letters)



>mm_chr17_21520290_21521315
          Length = 1026

 Score = 1168 bits (604), Expect = 0.0
 Identities = 622/630 (98%), Gaps = 4/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggactagtagcaaagggctgaccactgacttccctcaatcttttcaaaatctaagatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggactagtagcaaagggctgaccactgacttccctcaatcttttcaaaatctaagatac 260

                                                                       
Query: 61  tgatatgaccctccctaaggcaaaaatgccttaaggaaagacagccagggctggggtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatgaccctccctaaggcaaaaatgccttaaggaaagacagccagggctggggtgag 320

                                                                       
Query: 121 agggactgtcttccacggggacgggcggggccgctcacccggaaatagaaggtggatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggactgtcttccacggggacgggcggggccgctcacccggaaatagaaggtggatgtc 380

                                                                       
Query: 181 cattgggtggtggttgcggaagtgtatagagtgggcgtggttagaggtgtgaagtaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgggtggtggttgcggaagtgtatagagtgggcgtggttagaggtgtgaagtaaaaa 440

                                                                       
Query: 241 gatggtacactgagtgagtggggccagacaagttgagctgaaaaggctaagtccaaatgg 300
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggtacactgagtga----ggccagacaagttgagctgaaaaggctaagtccaaatgg 496

                                                                       
Query: 301 cgagggcccattacctgaaggagctgtaggtctgcatcgtgtgagatcgaatggtgcgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cgagggcccattacctgaaggagctgtaggtctgcatcgtgtgagatcgaatggtgcgga 556

                                                                       
Query: 361 gctgagtatagaagacacaggttggggtcctgtgaggacccaaaaactcccctatgccgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gctgagtatagaagacacaggttggggtcctgtgaggacccaaaaactcccctatgccgc 616

                                                                       
Query: 421 agatgccttgaacatcctggagtcagcagtctgtggctcagccggggaaccgcagcccgg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 617 agatgccttgaacatcctggagtcagcagtctgtggctcagccggggaaccgtagcccgg 676

                                                                       
Query: 481 cggctctggaacctcccaggtcagaggagctgcggggctgggaaactagggtcttggtgg 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgggtctggaacctcccaggtcagaggagctgcggggctgggaaactagggtcttggtgg 736

                                                                       
Query: 541 tggttatccggggggcagggatactgcctggcccagtgagagggagaaaagagaaaagtt 600
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 737 tggttatccggggggcggggatactgcctggcccagtaagagggagaaaagagaaaagtt 796

                                         
Query: 601 gagtggagtctacaaaagtaattaaggaaa 630
           ||||||||||||||||||||||||||||||
Sbjct: 797 gagtggagtctacaaaagtaattaaggaaa 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1026
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1016
Effective search space:   629920
Effective search space used:   629920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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