NNNCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGAGACTCTTGTAGCCTGCAATAAGACAACAAAGAGC
CAGAAATATAATTTGCTTTCTTAATTCCCTGATGGTAAGCAACAGGTGTT
ATTCTCCAGAAGCCAGTTGTTTCAGGCCACAAAATAGCAAAGAGTTAGGA
AAAGTAAATATTATAGAAAGTAAGCAATTTTAGCCCTGCAAAAGTAAGTC
TTGTCCTTGAAATCCATTGAAGCTACCCAACATTAACTTCTAAAAACCTG
GTTTCCAGAACTAAAGCTATTACTTTTTTAACAAATAATGTTAAGGCCTT
ATTGCTAAGGCCAACACCTACATATTTCCTGAACATGAAGAATTCAATGT
GATGCTTGCTTTGAAACTTAACCACTACTGACTATAACCACTCCACTCTC
TACCGGATGAGAAAGGTAAACAGCAACCCAGCTACAAAACCTTTGATATA
AAATGTTGACTTAACTGCAAGATACTCTTGTGTAAACATGTTGAATAAAT
CAAAAATTATCCCATTGATTTTAAGGACCTCTAGATGGTATGTTATTTTG
CCTAAGACTGTTTGGTAGCCAAGAACATGATATTAGATATGCCATGGAAC
CTTGTGGGAAAACTAATAAAAATGTTCTACCACAGGAGAAGAGCAACAAA
ATATTTCTTGATGACATGTTCTCCTATAAACATAGATTAGT

NTCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGTAAAGAAACTTA
GCAAAGTAGCTAGATTCAAACTGAACTCAAATAAATTAGTAGCCCTAGTT
TATACAAATCATAGTTGAGGTGAGAAAGAAATTAGGGTGACAAGACCCTT
TACAATAGCTCCACATAACATAAAATATCTTAGTGTAACTCTAATAAAGC
AAATGAAAAAACAGTATGGCAAGGACTTCAAGTCTATAAAGAAAGAAATA
GAGGAAAATATCAGAAGATGAAACTATGAGCCATGCTCATGGATCAGTAT
GATTAACATATTAAACATGGCAAATTTGGCAAAGCAGTTTACCAATTCCC
AAAGCGATCAACACAATTACTATAAAAATTCTAGCACACTTCTTTACAGA
ATTTAAAAAAATATATAGTTTCTTGTTGAAAATCAGAGAAACAAAATGAA
CAAACAAATAAAAAACAAATCCAGGAAAGATAATATAACCATGTGTAATA
AAAGAACTTCTGGGTATATTACCATCTCTCAGCTCAAGCTGTATTACCTA
GAAGTAGAAACAGAAACTCCATGGAATTGCTACTGAAACAGGCAGATTGA
TCAATGTAGTTGAATCAAAGATCAAGAAATAAAGCTGCACACCTAGGTAC
ACTTGATTTTTTTACAAAAAGACNAAACCTTACAACAGGTAAAATATAT

Query= MSMg01no453_o01.b1 MSMg01no453_o01.b1 CHROMAT_FILE:
MSMg01no453_o01.b1 PHD_FILE: MSMg01no453_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:53 2005
         (595 letters)



>mm_chr17_40157824_40158820
          Length = 997

 Score =  787 bits (407), Expect = 0.0
 Identities = 447/461 (96%), Gaps = 6/461 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagactcttgtagcctgcaataagacaacaaagagccagaaata--taatttg 62
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 459 gaattctgagactcttgtagcctgcaataagacaacaaagagccag-aataattaatttg 401

                                                                       
Query: 63  ctttcttaa-ttccctgatggtaagcaacaggtgttattctccagaagccagttgtttca 121
           ||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 400 ctttcttaatttccc-gatgctaagcaacaggtgttattctccagaagccaattgtttca 342

                                                                       
Query: 122 ggccacaaaatagcaaagagttaggaaaagtaaatattatagaaagtaagcaattttagc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggccacaaaatagcaaagagttaggaaaagtaaatattatagaaagtaagcaattttagc 282

                                                                       
Query: 182 cctgcaaaagtaagtcttgtccttgaaatccattgaagctacccaacattaacttctaaa 241
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 281 cctgcaaaagtaagtcttgtccctgaaatccattgaagctacccaacattaactgctaaa 222

                                                                       
Query: 242 a-acctggtttccagaactaaagctattacttttttaacaaataatgttaaggccttatt 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agacctggtttccagaactaaagctattacttttttaacaaataatgttaaggccttatt 162

                                                                       
Query: 301 gctaaggccaacacctacatatttcctgaacatgaagaattcaatgtgatgcttgctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 161 gctaaggccaacacctacatatttcctgaacatgaagaattcaatctgatgcttgctttg 102

                                                                       
Query: 361 aaacttaaccactactgactataaccactccactctctaccggatgagaaaggtaaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aaacttaaccactactgactataaccactccactctctaccggatgagaaaggtaaacag 42

                                                    
Query: 421 caacccagctacaaaacctttgatataaaatgttgacttaa 461
           ||||||||||||||| ||||||| |||||||| ||||||||
Sbjct: 41  caacccagctacaaaccctttgacataaaatggtgacttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 997
Length adjustment: 10
Effective length of query: 585
Effective length of database: 987
Effective search space:   577395
Effective search space used:   577395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)