BAC Information

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BAC

Clone NameMSMg01-454F08
Chromosome17 (Build37)
Map Location 88,710,710 - 88,710,951
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454F08.T7 (MSMg01no454_f08.b1)MSMg01-454F08.TJ (MSMg01no454_f08.g1)
ACCAG541134AG541135
length753772
length of high quality
(start - end)
497 (49 - 545)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no454_f08.b1 PHD_FILE: MSMg01no454_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:29 2005CHROMAT_FILE: MSMg01no454_f08.g1 PHD_FILE: MSMg01no454_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGAAAGACAGATTGAAATTTTCAGATAATGTAAGCTTGCTG
AAATAATCGTAGAATCCAGCTGGGCAGTGGTAGTTCACACTTTGAATCCT
AGAACTAAGGAGTCAGAGTCAAGCAGACTTCTGAGAGTTTGAGGCTAGTC
TGGTCTACAGAGGGAATCCTGGGACAGCCAAAGCTACACACTGAAACCCT
GTCTCAACAAAACAAAAATTAAAAAAAGAATCCTAGAATCCACCCCTCTC
TGGCCAGAACTATTTACATGAGAGCAATAGACCAAGAAGGAGATGAGAAA
CATGGACCTGGGGTTTTGTCCAACATTCCCCCTCCCCCTTGTTTTCTCAA
GACTCTTGACTGGCCTGAAACCTAATACTCAGACTGAGCTAGCCTGGAAG
ATTGAGCGATTCTCCTGCCCCTGCACCCAGAGTTCTGGGATTGCAGGTAT
GTGCAGCAATGCCTAGCCATTGTCTAACACATCTTTACTTTCTGTTTTTG
CCTGGCCACATGGAGCTGTCTCTCATTCCTTGAGAACTCCACTCTCTGAC
TACCTACCTTTCCTGGGAGNTATCATACCCTAATAATTAGATATTTGCCT
GTGAATTTGGCTGGCCGAATTCCTTTTATGGGAGCTTATAGTAAAGAAAT
CTTGTTTTTTGCCGGGGTTGTCTCTGGTGAAATAACAATTCTTCGCTTTT
GAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCTGGGTTCTATGTCTGGGG
GAGCCACATCTTATTTAGATCCGAGGATGATATCTTGTTGAGTGTTGGCT
TTATCCTAAAGCATGGTTGATAACTACAGTTCATGGGATCATTCTGCTTA
CTTCAGGGACAGTCCAGGGACATGGGAGGGAGGAGAGAGGTCCAGATGCT
ATGTGGGACTCTACAAACACTGTTTTTTTTTTCCTCAAATTTTGTTGGAC
ATGACAATTAATTGTATTGTATTATACTGGGTTGGGTTTTTGGNATAGGT
GGNGNNTTTTTTTTTNNTTGNNTTGTTTCCCTGTTTTTTTTTTTGTTGTC
TTCTCGCTTTTTTGCGCCCCTTTTTTTCCTTTTTTTTTATCCCTTTTCCT
TTTTTTTCGCGGGCCGGTTNCNCCTTTTTCTTTCTCTTTTTCTTTGCTTT
TTTTTTTCCTTTCTCTCTTTTTTTCCTCTTATCCTCGTTCTTCCGCNNTC
TTTTTCTTCGCTTTGTCTTTTCTGACCGACTTTTTTTTTCCTTTTCTTCT
CCCCTACCACCCCGTCCGTCCCCCCCTTTTTCCACCCTTTCTTTTGTCGC
CTTATTTTCCCCTGCTTGTGTTATAGATTAAATTATAACGCCCCACTATT
TCTTTTCCATCTTCCCCTATCTCGTCTTTACTTTTTTTTTTCCCCCCCAC
TCTTTTCTTCTTATTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_f08.g1 MSMg01no454_f08.g1 CHROMAT_FILE:
MSMg01no454_f08.g1 PHD_FILE: MSMg01no454_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:29 2005
         (241 letters)



>mm_chr17_88710510_88711152
          Length = 643

 Score =  412 bits (213), Expect = e-119
 Identities = 235/243 (96%), Gaps = 4/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcctgggttctatgtctgggggagccacatcttatttagatccgaggatgatatctt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttttcctgggttctatgtctgggggagcaacatcttatttagatccgaggatgatatctt 260

                                                                       
Query: 61  gttgagtgttggctttatcctaaagcatggttg-ataactacagttcatgggatcattct 119
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 261 gttgagtgttggctttatcctaaagcatggttgga-aactacagttcatgggatcattct 319

                                                                       
Query: 120 gcttacttcagggacagtccagggacatgggagggaggagagaggtccagatgctatgtg 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcttgcttcagggacagtccagggacatgggagggaggagagaggtccagatgctatgtg 379

                                                                       
Query: 180 ggactctacaaacactg--ttttttttttcctcaaattttgttggacatgacaattaatt 237
           |||||||||| ||||||  ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 ggactctacagacactgggttttttttttcctcaaattttgtcggacatgacaattaatt 439

              
Query: 238 gta 240
           |||
Sbjct: 440 gta 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 643
Length adjustment: 9
Effective length of query: 232
Effective length of database: 634
Effective search space:   147088
Effective search space used:   147088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)