BAC Information

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BAC

Clone NameMSMg01-454M11
Chromosome17 (Build37)
Map Location 35,014,899 - 35,015,139
singlet/doubletsinglet
Overlap geneC2
Upstream geneLOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb
Downstream geneZbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454M11.T7 (MSMg01no454_m11.b1)MSMg01-454M11.TJ (MSMg01no454_m11.g1)
ACCAG541474AG541475
length768783
length of high quality
(start - end)
98 (97 - 194)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no454_m11.b1 PHD_FILE: MSMg01no454_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:05 2005CHROMAT_FILE: MSMg01no454_m11.g1 PHD_FILE: MSMg01no454_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGGCGGCGCCAAANGANNNCCNATTTCGNGAGCTGCCGCGGNA
NNCCANCCTTTTCCTCACGTGTGGGNACCCCNGNNNCNTCNGGNCNCATT
GCCCAGGAAAGAGTTTTGCCCAAATGGACACACCCCAGCCCTTCTTGGAG
TCTAAGCCTTAGGCTTTCTAGGATAAATTAACACCCCCAGCTCGAGGTCT
GCCTCTCGCCTTCCCTTCGTTGTAGCTACTCCTGGCCAGACAGATTTTTT
GCTGCCAGCTCAGGGGGGGTGGGTACCCTCCTCCCAGAGCGAGAGGGGGC
AGGTTGAAAGTCTTTGTGATTTACGTGCAGGGCATGGAGGGCAGCCCCTA
GGCGCTGTTGTTCCACCGCATAGTCGAGGGCTCTGGCAGCCACCAGGGTT
TCCCGAAGGGCCCCCACCAGGCGAGTGCGCCCCTGGACCAGCCGTTCAGC
ATCGAAGTGCAGGTCGGGGTTGCTCTTGAAAGCTGGCAGGAAGTCTTGGG
CTGCATTGTCACGAGACACCTCTCCTAAAGCTGCCCTGAACCGCCGGGAA
GAAAATCTAGGTCCAAAGTATGCAGCAAAGATGGCATCGGGCGAGGAGGG
TCCGGCCCTAGCTTCAATGGTTTGGGCAAAGACACCCCCGAATTTTTTTT
TTTTTTTTACCACCTGTTTGAACTCACTTTATTTAACGGTTACCCACCAG
CCCGAACAAAATTGGAGGTTCTTATCACCACCTTTTATTTTTATCTATCC
CACTACCCCTTTTGATTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXTTCCGTAGTTGAGGTGAACT
ATAGAAGTACCAGAGAAAATCTCTACATAGATCAGGATGGCCTCAGACTC
TAAGAGACCCATCTGCCTCTGCCTCCTGAGTGCTGCTAGCATTAAGAGTG
TGTGGAGCTGAAGAAATTCATATTTTTTAATCTTCCTACTATGGAGTTTG
GAGTATAGTTCAGTGCCAGAGTGCCTGCCTGCACTCCAAGAATCTCTGGG
TCCCACCTCCAGTCTCACACACAAGTTGCATGCTTTAATACAGGGAGATT
ACATGTCCAATTTATANGTATTATATTTAGGNTTGAATAAATGGCAGTTT
GAGACTATTGCAAGGGAGTGAGTAAAGTGTCACTGTCCGGGTAGCTGGGT
GAGGCCTGCTACCTAGGGGACACTGCTTTCTCTGTGATGGTGAAGCTGGG
CATGTTTTTTTCCTTCCTTTCTTTCCCTCCTCAACGGACCGATTCGTTCT
CCCCACATGTTTCTGACCTTTTTCTTCTCCCCCTCCTTATCTCCGTCGCC
GCTTTTTCTTTCCCTCTTTTCTCTCCCCCTCCGCCGTTCCTCTCATTCCC
GCCTTTTTTTTCTCTCTCCTGCCCCTGTTTCTCTCCTGCCTCTCCACCCC
CCCATTTTTTTTTTTTTTTTTCCCACGCGCGGTTTAACCCCCCCTGGTGC
CAATTTTGTCCCCCCCCCTCTTTGTCTCTTCTCCATTCATCCTTTCATTT
TTGATATTTCCTTCCCTCCTTTCTTTATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_m11.g1 MSMg01no454_m11.g1 CHROMAT_FILE:
MSMg01no454_m11.g1 PHD_FILE: MSMg01no454_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:05 2005
         (242 letters)



>mm_chr17_35014699_35015339
          Length = 641

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacatagatcaggatggcctcagactctaagagacccatctgcctctgcctcctgagt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tctacatagatcaggatggcctcagactctaagagacccacctgcctctgcctcctgagt 260

                                                                       
Query: 61  gctgctagcattaagagtgtgtggagctgaagaaattcatattttttaatcttcctacta 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctagcattaagagtgtgtggagctgaagaaattcatattttttaatcttcctacta 320

                                                                       
Query: 121 tggagtttggagtatagttcagtgccagagtgcctgcctgcactccaagaatctctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 321 tggagtttggagtatagttcagtgccagagtgcctgcctgcactccaagaacc-ctgggt 379

                                                                       
Query: 181 cccacctccagtctcacacacaagttgcatgctttaatacagggagattacatgtccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccacctccagtctcacacacaagttgcatgctttaatacagggagattacatgtccaat 439

             
Query: 241 tt 242
           ||
Sbjct: 440 tt 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)