BAC Information

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BAC

Clone NameMSMg01-456B20
Chromosome17 (Build37)
Map Location 27,791,772 - 27,792,284
singlet/doubletsinglet
Overlap genenone
Upstream geneErgic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10
Downstream genePacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B20.T7 (MSMg01no456_b20.b1)MSMg01-456B20.TJ (MSMg01no456_b20.g1)
ACCAG542493AG542494
length742769
length of high quality
(start - end)
513 (72 - 584)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no456_b20.b1 PHD_FILE: MSMg01no456_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:49 2005CHROMAT_FILE: MSMg01no456_b20.g1 PHD_FILE: MSMg01no456_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGAGGAGGCGCGGAA
TTCTTAGCTTCCCNCGAACACTGTATGCAGGCATTCCTCTGGGCTCCTGA
ACTGGTGAACTTCAGAGCTCACGGTTAGCCTCACCACCAGGGGTTCAGGA
AGACTTCCTTCTTCGAACCCTGTGAACATCCAGGTCTCTCAAGGTAGGGA
GGGGCAGAGGTGGGCAGTTTTCGCCTCCTGGTCTTCCTTCTCTGGTTTGT
GTCACACTCTGGACACATTGAATGAATCCTCTGCTCTTCTGCGTCAGGCC
CCACTCCCTGTTTTTACAGTCCGGCTCCTGGAAGCAGTTAGAATACAAGG
CAGCAGCTGTGTGTCACCGTTTGGATCCCCAAGTCCCAGAGAACCTCCAA
AAAGGCCTCCAGCTAGCTTTGCTGACAGCCAGCTGAGGTGAACTGGCCTG
AGGATCCACACAGGCCTTCTTGGCAGAGCTGAGTGTGGGAGTGGGCCGTG
GGATAGGGCAGAGGAGAGCATCCTTACTATTTGGCCAATCTTAAGTATCC
TGCTCTCCATGAACCCAACACACACGGATAGGGAGGGGGTCATCTTACCA
GGGTTATACTGCTATCCCCTATCATGCGTGAACCCTCGCTTGAGAAGCAG
GGATTTAGGAGCGCGCAGGGATTCAAACACTCCGAGTTGGGCTAGCTGTT
GCATCGTTTCTTCCGTTGGTCTCCGGTACACCGTTGTTTTTG
TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATAGTTAGAGATCC
TCAAGGCTGTGGATGCACTCCCAGGCTCACAGCAGGGCACAAGCAGACTA
AAGTGTTTAAAGCACTGACTGGACAGAAATCTCTTTTCTGCTTCCTGGAT
TCAGAACAACAATAAATAAATATTTTTTTAAAAAAGGAGGAGTATGGGTT
AAAAAAAAAAATCAAAGAATTCTGGGCATGGTGGCACACATGTTCAATAC
CAGCAGAGGGAAGCAGAGGCAGGGGGATCTGTAGACTAAGGCCAGCCTGT
TTTATATAGACAATTCCAGGACAGCAAAGGTTTCAAAGGGAGGCCCTGTC
TCCAAAGCAGAAAAAAGAAAAGACCTACAAAGCCAATGGTTTCTATTTTA
CTGGTTAGGTACAGTTAATCTCTGAGAGTAAATCTGAGAGTAGAACAGGA
GGCAGTTCTGCAACAAATCAAGACAGAAACTACCTTTGCTTTACCCGAAA
GACGCAGCAAGCTCCTCCACATCAAAGGAGCCAGAAGTCAGATCAAGGGA
AAGGAAAGGCGGGAGGGGAGGCAGGCCCATGCTGCTTGCAGGGGGACAAA
ACAAATCCCTATCATTTAAATTGTAGGAACTTCTACATTACCATACTTAC
AAAAATGGATCCACCGAAGGAATTCTCCGGGTGCGGAACTTATAAGCGGC
CACCGGGGACTGGGAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b20.b1 MSMg01no456_b20.b1 CHROMAT_FILE:
MSMg01no456_b20.b1 PHD_FILE: MSMg01no456_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:49 2005
         (513 letters)



>mm_chr17_27791572_27792484
          Length = 913

 Score =  932 bits (482), Expect = 0.0
 Identities = 505/518 (97%), Gaps = 10/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatgcaggcattcctctgggctcctgaactggtgaacttcagagctcacggttagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatgcaggcattcctctgggctcctgaactggtgaacttcagagctcacggttagcct 260

                                                                       
Query: 61  caccaccaggggttcaggaagacttccttcttcgaaccctgtgaacatccaggtctctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccaccaggggttcaggaagacttccttcttcgaaccctgtgaacatccaggtctctca 320

                                                                       
Query: 121 aggtagggaggggcagaggtgggcagttttcgcctcctggtcttccttctctggtttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtagggaggggcagaggtgggcagttttcgcctcctggtcttccttctctggtttgtg 380

                                                                       
Query: 181 tcacactctggacacattgaatgaatcctctgctcttctgcgtcaggccccactccctgt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 381 tcacactctggacacattgaatgaatcctctgctcttctgagtcaggccccactccctg- 439

                                                                       
Query: 241 tttt-----acagtccggctcctggaagcagttagaatacaaggcagcagctgtgtgtca 295
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ----gggcaacagtccggctcctggaagcagttagaatacaaggcagcagctgtgtgtca 495

                                                                       
Query: 296 ccgtttggatccccaagtcccagagaacctccaaaaaggcctccagctagctttgctgac 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccgtttggatccccaagtcccagagaacctccaaaaaggcctccagctagctttgctgac 555

                                                                       
Query: 356 agccagctgaggtgaactggcctgaggatccacacaggccttcttggcagagctgagtgt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agccagctgaggtgaactggcctgaggatccacacaggccttcttggcagagctgagtgt 615

                                                                       
Query: 416 gggagtgggccgtgggatagggcagaggagagcatccttactatttggccaatcttaagt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gggagtgggccgtgggatagggcagaggagagcatccttactatttggccaatcttaagt 675

                                                 
Query: 476 atcctgctctccatgaacccaacacacacggataggga 513
           |||||| ||||||||||||| |||||||||||||||||
Sbjct: 676 atcctgttctccatgaacccgacacacacggataggga 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)