BAC Information

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BAC

Clone NameMSMg01-457P07
Chromosome17 (Build37)
Map Location 33,622,362 - 33,622,774
singlet/doubletsinglet
Overlap genenone
Upstream gene4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953
Downstream geneAdamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P07.T7 (MSMg01no457_p07.b1)MSMg01-457P07.TJ (MSMg01no457_p07.g1)
ACCAG543898AG543899
length1,180765
length of high quality
(start - end)
---424 (81 - 504)
definitionCHROMAT_FILE: MSMg01no457_p07.b1 PHD_FILE: MSMg01no457_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:23 2005CHROMAT_FILE: MSMg01no457_p07.g1 PHD_FILE: MSMg01no457_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAACAATAGNTAANCTCGTTGTGGATGCTCGCGGGGCGCGTCCCGGTG
TGCTGTTGGGCGTCTTCGGTGGTTGTGTCTCCTTTTCTGCTCTATCACAT
GCGGGGTTTGCGGGCGCTCGCTCTGACCTCTATCTTTTCCTAACTGTCGC
GTCTTGCTCCTAATACTGTCTATGACTAATATAGGTGCTCTAGTGCGTGC
GCGTGGGTGCGTACGACATAGCTTATTATGCCGCCTACATCTTCGTGATA
GAGTACTAAGACGATATCTATGTACGACATCTTAACTCCAACACTTCTCT
TAGGCGCGGTGTAGTTCCTTGGCGGTCTGCAGGACGGCACAAGGCAGGAG
TGACATACGAACGGATCGACGAGGATAGGGGGCGCAGAAGTGAGGAATGG
CGGTACTACGCTCTGTCAGAGGCCTGGCGTGCTCACATGATTGCAGTACG
ACGTCTGATGCAGCCTGTCATCCGCCGGCGTACGCAGCCGCGTCCGACGA
GACGCGGTGTTGGTTCGGTTGTGGTGGCGCGCGCATGGATGGCGTAGACG
AGGTCGCACGAATCGGTGCTTATAGGCGAACGCTGGAGAATTGGCCTGAC
GGGAACTGTCGAGAGATGACGCGTTATGTCGGATATGTTGGGTGACGTCG
ATCCCATCGCATGTATACTGAAGCACACAATGGAGCCTCTAGCGGACGCT
CGATGGCAGCGCTCGCGCGATGATATCGATCGCTCGATTGTCCACTCAGA
ACGCCGATCATGGAGTGCATATCCGATGCCGGCTGTATTGACCTTATGTC
TTCGTCCGCTAACCGTTGCTGTTGATACATGCAGCTGCTCTATATACAGC
TATGCCTGTATGTCCAGACCTAACCGGATAAGTGATACTACGGCGAGGCG
TATGTAGCATGACGGACTCAGGATGCGGGCACGAGAAATGCGGCATGCGA
ANATTGCGCGTAATATGTATCGGGTATACGAGCGTATGTGTGTTGCGATC
AGTATATGTATGACACGTCGTACGGATCGATGACGATATACGCCGCGATA
TGATGGTGTATCGCGCGCTGAACGACGCGACACGCGATATGTTGTACTAG
TATAAATAATCCGTGACGCTCGGTCTGTGATCGCGCGATGGGGCTAGTCT
TGGATGCGTCACACCTATCAGACAATGTTT
NNCCCCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATCGTCCTCAGATGCAC
AGTGAGTTTTAGGCTAGCCTGGGCTACCTGTGTCAAAAAGCAAAACAAAA
CAAAAAGCTAGTGAGACGGCTCAGTGGTAAAGATGCTTGCAAAGCTCAAG
CCTGATGCAATTTAAGTTTTATCCTCAAAACTCACCTGCAGGTGAAAGGA
CAGAACTGACCCCACAAAATCGTCCTTTGACCTCTACGTGCATTCATATA
CCTCCTCCAGCTCCCCCACATATAATAATTATTTTGACGCAAGCTCAAAA
GGAAACAAATCAATGGGTTTCATTGTGATATTTACATGCCAATAATCCTG
GGATATATATCCCATTGTCCTCAACCCTCAAAGTTCCCCCTTCTACTTTT
ATGCCATGTATATGTCTAAATCCAGAGTCCATGTGTGAGGGGAGGCATGC
TGAATAGGTGTTTCTCTTTCTGAGTCTTGCTTAGTCTTCTCTTTCTGTGC
TTCTTTGTGCGCGACGTATAGTGAATGCATGGATGCTGTTTTATGGCCCC
TGTTTGATCCTTCTCTGTCACTCTCCTGTAATATTAATTTAAAAAGTTCT
CTCTTGCTGACTCTTGCATTTTTTTTTTTTTTCTTATCTTTATCCCTTAT
TTTTTTTGCCCTGGTCGCTTTCTCCTCCCATTCTATCTATTATTTTATAT
ATTCTTTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p07.g1 MSMg01no457_p07.g1 CHROMAT_FILE:
MSMg01no457_p07.g1 PHD_FILE: MSMg01no457_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:23 2005
         (424 letters)



>mm_chr17_33621951_33622774
          Length = 824

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  cagatgcacagtgagttttaggctagcctgggctacctgtgtcaaaaagcaaaacaaaac 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 cagatgcacagtgagttttaggctagcctgggctacctgtgtcaaaaagcaaaacaaaac 765

                                                                       
Query: 72  aaaaagctagtgagacggctcagtggtaaagatgcttgcaaagctcaagcctgatgcaat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aaaaagctagtgagacggctcagtggtaaagatgcttgcaaagctcaagcctgatgcaat 705

                                                                       
Query: 132 ttaagttttatcctcaaaactcacctgcaggtgaaaggacagaactgaccccacaaaatc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttaagttttatcctcaaaactcacctgcaggtgaaaggacagaactgaccccacaaaatc 645

                                                                       
Query: 192 gtcctttgacctctacgtgcattcatatacctcctccagctcccccacatataataatta 251
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 644 gtcctttgacctctacgtgcattcatatacctcctccagctcccccacatataataagaa 585

                                                                       
Query: 252 ttttgacgcaagctcaaaaggaaacaaatcaatgggtttcattgtgatatttacatgcca 311
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atttgacgcaagctcaaaaggaaacaaatcaatgggtttcattgtgatatttacatgcca 525

                                                                       
Query: 312 ataatcctgggatatatatcccattgtcctcaaccctcaaagttcccccttctactttta 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ataatcctgggatatatatcccattgtcctcaaccctcaaagttcccccttctactttta 465

                                                                
Query: 372 tgccatgtatatgtctaaatccagagtccatgtgtgaggggaggcatgctgaa 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgccatgtatatgtctaaatccagagtccatgtgtgaggggaggcatgctgaa 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)