BAC Information

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BAC

Clone NameMSMg01-458B15
Chromosome17 (Build37)
Map Location 47,329,364 - 47,329,602
singlet/doubletsinglet
Overlap genenone
Upstream genePolh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458B15.T7 (MSMg01no458_b15.b1)MSMg01-458B15.TJ (MSMg01no458_b15.g1)
ACCAG544010AG544011
length732734
length of high quality
(start - end)
500 (78 - 577)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no458_b15.b1 PHD_FILE: MSMg01no458_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:35 2005CHROMAT_FILE: MSMg01no458_b15.g1 PHD_FILE: MSMg01no458_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAACACCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGAAT
GCGCGGAATTCTGTGCAGTTCCCGTGGATGCTAGAAAGGGTATCAGATCT
CCTGGCACTGGAGTTACAAATGGTTGTTAGTTACCATTTGGGTGCTAGAA
GCAAACCCAGGTCCTCTGGAAGAGCAACTGCTGTTCCCTACTGCTAAGTC
ACCTCTAGTAAGAATTCTGGAATTTTGGCTTTTTTTAAAAACACAAAACT
ATTTTAAGAGTATGTTTTCATTTTAATCCCATGTGTGGGGCTGCTTTGGA
CTGTCTGCAGCTGCTGACTGTGATTTGTCTCTTGTTCTAGTGGAGGTGTG
GTTTTGCCAGCTGCAGATAGTTTCTGACATTGCTTCTGAACTTTTCAGAG
GGTATATGAATGAGAGGTGGGGTTGGTGGTTGCTGGTCATTCAGGGGGGT
TGGTTAGTAGTCATGCTCAAAGCAGAAATTAAAAGAAAGGAATCATATTC
AGGGATCTTTTTCTCTTCTCTATCCTTCTTTCTCTCCTATCTAATGATAG
AGGATAAAAGAGAGAGTGGGGGTGTGGGAGAATCAAGGGTATGAAAAATA
TAAACTCCTAACCTCATAGATCATTTCTCATTTCCTGCTGTATGACATTT
GCCACCTGTGTACTTTTGTATTTGTTCTTCCTGAATAACTTCCTTCTATC
TTGTCTGGCTTCATTTCTCCATACCCTTCTTT
TCACGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCACAAGCTGTACAAACTGACCTGT
GCAGTCCTTCTGCCTGGTTCTTCCTAGTGAAGGGATAGGGCAGTGTTCGG
GGCGTGGCCGACTGGGTGAATGGTATAGTCTGTCTCTGGGACCAGAAGTA
TTTTGGGCCACACATCAGATGTGGGTCCTGTGACCTCTGTTAAAAGGAAA
TGCTTTCAATGTAGGGGAGAGTGGGGAGGAGTCTAGCCATGGCGGCTGGC
TCCACCCACTCATCACGTTTTTTTTTGCAGTACTAACTCCAGAGGTGATG
TCCTTCCCACTGCACCCCAAAGACTCCTGGGATTTAGAATGTTCTAATCC
TGGGAGCCATTCGCCATGGGGCCTTTGGGCCTCTTTTTAAAGTTTATTAT
TTTTAAAAGGTTTTATTTTACATGTATGGGTGCTTTGCCTATAGATATAT
GTATGCACCATGCATGTGTCTGGTGTCTGGGGATCCCACAGAAGGGTGTG
GATACCCTGCACATGGAGCTAGAGACAGTTGTGAGCTGCCATGTGGCTGC
TGGCCACTGAACTGTCGCCAGTTCTCCTAACCGCTAGGCTATCTCTCCAG
CCTTTTTCTTTTTTGAGGGATGTATAGGTCTCCGGCCAACGTCTCTTCTC
ATGGCTGGCTGATAATTCCACTTCCGGCATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_b15.g1 MSMg01no458_b15.g1 CHROMAT_FILE:
MSMg01no458_b15.g1 PHD_FILE: MSMg01no458_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:35 2005
         (239 letters)



>mm_chr17_47329164_47329802
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaagctgtacaaactgacctgtgcagtccttctgcctggttcttcctagtgaagggat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaagctgtgcaaactgacctgtgcagtccttctgcctggttcttcctagtgaagggat 260

                                                                       
Query: 61  agggcagtgttcggggcgtggccgactgggtgaatggtatagtctgtctctgggaccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcagtgttcggggcgtggccgactgggtgaatggtatagtctgtctctgggaccaga 320

                                                                       
Query: 121 agtattttgggccacacatcagatgtgggtcctgtgacctctgttaaaaggaaatgcttt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agtattttgggccacacatcagatgtgggtcctgtgacctatgttaaaaggaaatgcttt 380

                                                                      
Query: 181 caatgtaggggagagtggggaggagtctagccatggcggctggctccacccactcatca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgtaggggagagtggggaggagtctagccatggcggctggctccacccactcatca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)