Query= MSMg01no458_l20.b1 MSMg01no458_l20.b1 CHROMAT_FILE:
MSMg01no458_l20.b1 PHD_FILE: MSMg01no458_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:25 2005
(262 letters)
>mm_chr17_5494078_5494739
Length = 662
Score = 484 bits (250), Expect = e-141
Identities = 259/262 (98%)
Strand = Plus / Plus
Query: 1 atgtaaggcctggagaggaaaaccagacaccacgtggctccttctgattccagaaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaaggcctggagaggaaaaccagacaccacgtggctccttctgattccagaaacaac 260
Query: 61 cctttggggctctatcctgggggctgcgccggtgggggacgaccactacatggaagtctt 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cctttggggctctatcctgggggctgcgggggtgggggacgaccactacatggaagtctt 320
Query: 121 taggaaaatcaaatagatcatagcaacaatccttctgcctgctgaagacaggtcctcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaaaatcaaatagatcatagcaacaatccttctgcctgctgaagacaggtcctcctt 380
Query: 181 actagtagcccataggtagagtttagccacaatccagatcaaatgcacagattgagttca 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 actagtagcccataggtagagtttagccacaatccagatcaaatgctcagattgagttca 440
Query: 241 gccatctgcagcttctcccccc 262
||||||||||||||||||||||
Sbjct: 441 gccatctgcagcttctcccccc 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no458_l20.g1 MSMg01no458_l20.g1 CHROMAT_FILE:
MSMg01no458_l20.g1 PHD_FILE: MSMg01no458_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:25 2005
(478 letters)
>mm_chr17_5672795_5673672
Length = 878
Score = 822 bits (425), Expect = 0.0
Identities = 437/441 (99%)
Strand = Plus / Minus
Query: 1 tatagcagactttcctactactcagtcttctgattccactgaccatggcttcgctttgga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tatagcagactttcctactactcagtcttctgattccactgaccatggcttcactttgga 382
Query: 61 ctctaacatttgtgtgtttcactctggacactactgagtgactggcctgtgttctctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctaacatttgtgtgtttcactctggacactactgagtgactggcctgtgttctctgtt 322
Query: 121 gtgggtttgatgagtctacgtgttaaaggccaggtccccagggtgccttcttgggaggtg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggttggatgagtctacgtgttaaaggccaggtccccagggtgccttcttgggaggtg 262
Query: 181 ctgtgaatccttagaagaagggagctatggctggtctgtaggtcattgatggcctgatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgaatccttagaagaagggagctatggctggtctgtaggtcattgatggcctgatcc 202
Query: 241 ttgctatggtttatatgtaaaatgtcctccttgggctcctgggtttgaatgcttagtccc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctatggtttaaatgtaaaatgtcctccttgggctcctgggtttgaatgcttagtccc 142
Query: 301 cagctggtggcagtacatggaagaaagtaggtcttgggggtgtggccttaaggttttaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cagctggtggcagtacatggaagaaagtaggtcttgggggtgtggccttaaggttttaca 82
Query: 361 gctcagatctacttcctgtctgctctctgtttcttgacagagaggccatgtgactagctg 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 81 gctcagatctacttcctgtctgctctctgtttcttgtcagagaggccatgtgactagctg 22
Query: 421 gtttcttgctcccactgcagt 441
|||||||||||||||||||||
Sbjct: 21 gtttcttgctcccactgcagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
