BAC Information

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BAC

Clone NameMSMg01-458O13
Chromosome17 (Build37)
Map Location 28,203,280 - 28,203,566
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
Downstream geneTcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O13.T7 (MSMg01no458_o13.b1)MSMg01-458O13.TJ (MSMg01no458_o13.g1)
ACCAG544628AG544629
length732724
length of high quality
(start - end)
282 (373 - 654)50 (272 - 321)
definitionCHROMAT_FILE: MSMg01no458_o13.b1 PHD_FILE: MSMg01no458_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:38 2005CHROMAT_FILE: MSMg01no458_o13.g1 PHD_FILE: MSMg01no458_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTATCGAGC
GNGGAANNCCTCTGATGACANTACCGACCGAGNCACCNCCGGAGGNCNTG
ANCAAATCCACACAAGAGCCTGTTACCCAGTGCTTCATATCCAATCATTT
AGCTGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACCTGGGAGGCAGA
GGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC
CAGGATTTTCAGGACTATACAAAGAAACCCTGTCTCGAAGAAAAAAAAAA
AAGAACAAACAAAATGCCCTCATTNCTACTTTTAAGCTTGAANGGNACTT
TCTCTGTGTTAAGATGGGGTTCCTGACTCCTCCACATGGAAAAACAAGAG
GACACATTTCAGAACTTCAACTGCGTGGGTTACTCACTTTCATTGGGAAA
CACCTGTGCACCCTGTCAGCCCAGAGTCTGTACCCACTGCCTAGCCAGTG
TTCACAGAGCCCTGCAGCACTCTCAACAATGAGGCTTCCCAGATGTGCAC
TTCTGGATACATGTAACTGATGAATTTGGTCTCCACAGTGTCCTCTCCTG
GCTGGCTGGGCAACATGAAGGCTCCAGGGAAGCGCTTTACCCTTGGCTGA
CCCTAACGATTTTTTCTTAGCATGGTGGCCGCCATCTGTGCACACTGTGG
GGGGCTCCTGTGGCCAGAAAGAGGTGCACTGG
GGGGGGCAATGAAGGGGGGAGGCCTGGGGGGCGCCTGTTTCCCTACCAGT
AGGNNGAANNAGAGAAGTACCAGCACCATGCCAANANNAAAAGAAAAGAA
GGGAANNCGGGGGCGGGGGAAATTGGCCCGGAGGCGCAGGNCGGNAANCC
CANNCCNCAGCAGGNAAGAAAANAGAGGCAAAAGCGCAGGNCACCCCGGC
NACACAGNAAGNAAGAGCCCAACCCGGGCGGCAGGAGACNCGGACNCGGG
GGGGTTTTTTTGGGGNGAAGNCCTAGCCTCTCCTTCTCACAATCTGACTT
TCCAAACTCCCNCCTTCAGTATTTTTATTTTGGAGCNGNNCCCAGCGCCC
NNACCGGACACNNNCAACCCCCCACCCCNAGGNGCCGCGGGCAAAGGACG
GNCACGNNCCAACAGANCCACCCCCACACCAGGACGGGGGACCCAAGCCA
CCAACCNAACCACACGGGACCACGGCAAGAGGACCCCCAACAGCGCCCAC
AAAACGAGACCGCAGCCAGAACCCACAGCAGGAGCACCCCAACACGGCCC
ACAGCAGGAGCACCCCACCAAGAAACACCGCCACACAGCAACCGAGACAC
CANACAGCAGNCAGAGGGACACCCCGAAAAAAAGCCAAACCCGCCACGCA
CCTTTTTTTTTTTTTCGAGTGGATGGCGCCCTGTCAAAAGTCAACCACCT
CCCTCCTTTCTTGCGTCCGGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o13.b1 MSMg01no458_o13.b1 CHROMAT_FILE:
MSMg01no458_o13.b1 PHD_FILE: MSMg01no458_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:38 2005
         (282 letters)



>mm_chr17_28203085_28203766
          Length = 682

 Score =  501 bits (259), Expect = e-146
 Identities = 278/289 (96%), Gaps = 9/289 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgactcctccacatggaaaaacaagaggacacatttcagaacttcaactgcgtgggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 ctgactcctccacatggaaaaacaagaggacacatttcagaacttcaactgtgtgggtta 255

                                                                       
Query: 61  ctcactttcattgggaaacacct-------gtgcaccctgtcagcccagagtctgtaccc 113
           ||||||||||||||||||||  |       |||||||||||||| |||||||||||||||
Sbjct: 256 ctcactttcattgggaaaca--tgagcagggtgcaccctgtcaggccagagtctgtaccc 313

                                                                       
Query: 114 actgcctagccagtgttcacagagccctgcagcactctcaacaatgaggcttcccagatg 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actgcctagccagtgttcacagagccctgcagcactctcaacaatgaggcttcccagatg 373

                                                                       
Query: 174 tgcacttctggatacatgtaactgatgaatttggtctccacagtgtcctctcctggctgg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgcacttctggatacatgtaactgatgaatttggtctccacagtgtcctctcctggctgg 433

                                                            
Query: 234 ctgggcaacatgaaggctccagggaagcgctttacccttggctgaccct 282
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgggcaacatgaaggctccagggaagcgctttacccttggctgaccct 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)