BAC Information

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BAC

Clone NameMSMg01-459L17
Chromosome17 (Build37)
Map Location 24,234,754 - 24,426,728
singlet/doubletdoublet
Overlap genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17
Upstream geneLOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Downstream geneAbca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459L17.T7 (MSMg01no459_l17.b1)MSMg01-459L17.TJ (MSMg01no459_l17.g1)
ACCAG545255AG545256
length758765
length of high quality
(start - end)		504 (41 - 544)416 (69 - 484)
definitionCHROMAT_FILE: MSMg01no459_l17.b1 PHD_FILE: MSMg01no459_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:46 2005CHROMAT_FILE: MSMg01no459_l17.g1 PHD_FILE: MSMg01no459_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,234,754 - 24,235,253)(24,426,313 - 24,426,728)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAGATATCCCTGCCTCTAACTCAGAGTATTGGAATTAAAGGCATGCACC
ATTAAGCCCAACCATTTTTGTTTGTTCAGCCACAAGGTTTTACCATGTAT
CCCAGTCTGGATTTGTACTCATGATCCTCCTTAACTCATCCTCTGAGATA
CGGGGAGTATAAGGGATTTATCACTGTACCAGGCTCATACTTCACTAGTT
AAGACCTACTAAAGTCTCTCTTTCAAATAGTAATTCCTTATGACTAAATC
TAGTAGATATCACAGAGAGAAGAGAAGGGCAGTTGTATTAAAACAAGTTA
CCTTTTACACGCCGACTTCTCTGTGAGCAGCTCTGGAGAAACATACTGTG
CTGTTCCTACAAATGAGTTGGCCCTGGCTAGAAAGTGGGGAGGGAAGAAG
AAATGTCACACTTGAAAATGCAATCCCTGGCCCCCCACCACACTGCCCTT
CTTGTTTATTTTTCAAGGTATCCACATCTAACTATACAGATGGAAGCTGG
TCATCAGCTTAATTGGTCACCTGGAATAGACTGCGCCATCAAAGGACCCT
CCCCTAAGATACTGGATCCTATCTACGGAATACCTCCTACCTAACACCCA
CTGCTGGAGGGATCTCTCATATTCCTCCCTCCCCCTGGTCCTTAAAGCAA
GTATCGCAAGGATAATGGCCTTGTCTGTGGTTTACTCTTTTGGAACTGGT
GATTCATN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATAGAGAGCTGGAGAGGAGGCCAGCCTTTGG
GTGTGTGTGAGGCTGGTAATGGGGTACCCAGAAAGAGCAGAAGACTGGGG
AAGCCCATGATGAGTGTACTGTGTGCCACTGGGCCTGGTGCGATGTTTTC
TCAGCATTCTCTCTGCCCAGTGTGCCTTTGGCTTCCTCCCAGGTTCTGTA
GAGGACTTCCTCCTGAAGAAGGCAAAGGAGGCTCCTGAGGGCTTTGATAA
GCTCTACGTGTTGTCTGCTTCTTTTGAAGATGTGAATAACCACACGACAG
TGAAGGCGCTGTTCAACAACCAGGCCTACCACTCCCCTAGCCTGGCTCTG
ACTCTGGTGGACAATCTTCTCTTCAAGTTGCTTTCTGGAGCCAATGCTTC
CATTACCACAACCAACTATCCTCAGCCTCAGACAGCCATCGAGGTCTCAG
AGCCAATCCTGTCTAGTGCGTGAGACTGCCTTTCTTCCTGTCTCAAGGTT
TTGCTTCTTATAGCACTTCCCGCTTTTCTGCCTGCTTTCTGGTTCTCATT
TTTCTTTCCCGGGTTTAATTTTTTTTTCCATCATTGCTTTTTGTTTTTCT
TTTTTTCCCCCCCGGATTTTCCTCTGTCGCTCTCTTTTTTTTTTCATAAA
ATATCTCGGTCTGTCCCCCTTCCCCCCCCGCCGTCCCATTCCCCCCTTTT
CCCTTTTATTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_l17.b1 MSMg01no459_l17.b1 CHROMAT_FILE:
MSMg01no459_l17.b1 PHD_FILE: MSMg01no459_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:46 2005
         (504 letters)



>mm_chr17_24234550_24235453
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 499/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagatatccctgcctctaactcagagtattggaattaaaggcatgcaccatta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagatatacctgcctctaactcagagtattggaattaaaggcatgcaccatta 264

                                                                       
Query: 65  agcccaaccatttttgtttgttcagccacaaggttttaccatgtatcccagtctggattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcccaaccatttttgtttgttcagccacaaggttttaccatgtatcccagtctggattt 324

                                                                       
Query: 125 gtactcatgatcctccttaactcatcctctgagatacggggagtataagggatttatcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtactcatgatcctccttaactcatcctctgagatacggggagtataagggatttatcac 384

                                                                       
Query: 185 tgtaccaggctcatacttcactagttaagacctactaaagtctctctttcaaatagtaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaccaggctcatacttcactagttaagacctactaaagtctctctttcaaatagtaat 444

                                                                       
Query: 245 tccttatgactaaatctagtagatatcacagagagaagagaagggcagttgtattaaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttatgactaaatctagtagatatcacagagagaagagaagggcagttgtattaaaac 504

                                                                       
Query: 305 aagttaccttttacacgccgacttctctgtgagcagctctggagaaacatactgtgctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagttaccttttacacgccgacttctctgtgagcagctctggagaaacatactgtgctgt 564

                                                                       
Query: 365 tcctacaaatgagttggccctggctagaaagtggggagggaagaagaaatgtcacacttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctacaaatgagttggccctggctagaaagtggggagggaagaagaaatgtcacacttg 624

                                                                       
Query: 425 aaaatgcaatccctggccccccaccacactgcccttcttgtttatttttcaaggtatcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaatgcaatccctggccccccaccacactgcccttcttgtttatttttcaaggtatcca 684

                               
Query: 485 catctaactatacagatgga 504
           ||||||||||||||||||||
Sbjct: 685 catctaactatacagatgga 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_l17.g1 MSMg01no459_l17.g1 CHROMAT_FILE:
MSMg01no459_l17.g1 PHD_FILE: MSMg01no459_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:46 2005
         (416 letters)



>mm_chr17_24426113_24426928
          Length = 816

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagagagctggagaggaggccagcctttgggtgtgtgtgaggctggtaatggggtacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatagagagctggagaggaggccagcctttgggtgtgtgtgaggctggtaatggggtacc 557

                                                                       
Query: 61  cagaaagagcagaagactggggaagcccatgatgagtgtactgtgtgccactgggcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cagaaagagcagaagactggggaagcccatgatgagtgtactgtgtgccactgggcctgg 497

                                                                       
Query: 121 tgcgatgttttctcagcattctctctgcccagtgtgcctttggcttcctcccaggttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgcgatgttttctcagcattctctctgcccagtgtgcctttggcttcctcccaggttctg 437

                                                                       
Query: 181 tagaggacttcctcctgaagaaggcaaaggaggctcctgagggctttgataagctctacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tagaggacttcctcctgaagaaggcaaaggaggctcctgagggctttgataagctctacg 377

                                                                       
Query: 241 tgttgtctgcttcttttgaagatgtgaataaccacacgacagtgaaggcgctgttcaaca 300
           || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggtggcagcttcttttgaagatgtgaataaccacacgacagtgaaggcgctgttcaaca 317

                                                                       
Query: 301 accaggcctaccactcccctagcctggctctgactctggtggacaatcttctcttcaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 accaggcctaccactcccctagcctggctctgactctggtggacaatcttctcttcaagt 257

                                                                   
Query: 361 tgctttctggagccaatgcttccattaccacaaccaactatcctcagcctcagaca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgctttctggagccaatgcttccattaccacaaccaactatcctcagcctcagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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