BAC Information

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BAC

Clone NameMSMg01-459M03
Chromosome17 (Build37)
Map Location 30,773,108 - 30,773,349
singlet/doubletsinglet
Overlap geneDnahc8
Upstream geneRnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik
Downstream geneGlp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M03.T7 (MSMg01no459_m03.b1)MSMg01-459M03.TJ (MSMg01no459_m03.g1)
ACCAG545275AG545276
length791773
length of high quality
(start - end)
244 (71 - 314)453 (73 - 525)
definitionCHROMAT_FILE: MSMg01no459_m03.b1 PHD_FILE: MSMg01no459_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005CHROMAT_FILE: MSMg01no459_m03.g1 PHD_FILE: MSMg01no459_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTANCTAACACCAGCATTAGATCAATAAACCAAACCCAGGAGGCT
GTGTGGCATCACAGCTCACCTTTATAAAGCCAGCCTTGACCACAAGGTAT
GTTATAGTGGGGAACTTTGGTGACCTGGTAAACCACAGTCTGTCTCCAGC
TAATTGTGCACCATGGCACCTCTGGTCTAATACACACATCTCCAGGGTGG
AGGGTAGGAGAGAAAGGCACCATCAGTCCATGTGCATACATGCTCCTGTG
CGCCCGCACGTGTTTTTTTTTACACACACACACACACATACACACACACT
CTCACTCTTTTCTCACCCTCTCCTACCCATTCCAAAACTAATGCTAAAAC
ATTTTATCTCTTCTTTCCCTTTCTTATCCACTTCTCCTCTTACCCCCCCC
TTTTTTTTTGTTTCTACTACCCATCCTTCCCTTCTTTTCCTATTACCCCC
CCCTTTTTTTTCTACTTCCCCATTTCCATTCTTCCCCCTTTCTCCATTTC
CCCCCCCCTTTTCTTTATCTTCTCCCCCTCCTTTTTCCCACTTCTCTCTT
CCTTCCCTCTTTTCCCCCATTTCCTTTTTAGGTTCTTCCTCCTTTTATCT
CCCCTTTTTTTTACGCCTTTTTTTTATTCGGTTCCGTCCATCTCTCCCCT
CCCTCTTCACCCCCATTTCTCCTATCCCTATCCTTTTTTCTTCCCCCCCA
TTTTCACTTCGCCGCCCCACCCTTCNANTTTCTTACTTAAG
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGGAGCTGGACTCACAGGCAGTGAAC
TGCATGATGTGGGTGCTGGGAACCAAACTCATGTCCCCTGCAAGAGCAGC
CAGTGTTCTTAGACACCGGGCCATCTCTCCAGCCCTGATCTCCTTGCACT
GTCCTGTGAATAGAACTGTTTCTCTCTCCAGAGACTCAAAAAAACAAAAA
CAAAAACAAAACAACAACAACAAAAACAAACCCTGGGTGTACAGAGAGCT
ATAGCTGTACCTGAAGAGTTGATTCGTGCACTCTAAACATTAGGAAGGCT
TATGAGATCATTGAGAGGGCTCAGCCGGTAAAGGTGTCTGCTGCCAAGCT
CAAGGGTCTGAGTTCAATCCCTGAAACGCACTTAGAGGTGAAGAGAACTG
ACTCCAGCTAGTTGTCCCCTGACCTCCACACTTAGGTCATAGCACGCATG
TGCACACACACACACACACACACACACACACACTTACACTAATAGTAAAA
GCCAATTTTTTTAACAAAAGTTTCTTATCTCTATTTGATCTTTGCCCTTA
TAGTTATATAAATACCCCACAAAGCGGATAGATGTATGCTTTAAAGCATC
ATCATCAAAACTATTATGGTGAATAAACTTAACAAATTCCCCCTTTAAAG
TCCGTATCTCCACTAAATAAGTTTCTGCTTCTCTTATTCCGCGTGTTTAA
CGCCTCCTTCTTCATAAAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m03.b1 MSMg01no459_m03.b1 CHROMAT_FILE:
MSMg01no459_m03.b1 PHD_FILE: MSMg01no459_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:48 2005
         (244 letters)



>mm_chr17_30772908_30773551
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagatcaataaaccaaacccaggaggctgtgtggcatcacagctcacctttataaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attagatcaataaaccaaacccaggaggctgtgtggcatcacagctcacctttataaagc 383

                                                                       
Query: 61  cagccttgaccacaaggtatgttatagtggggaactttggtgacctggtaaaccacagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagccttgaccacaaggtatgttatagtggggaactttggtgacctggtaaaccacagtc 323

                                                                       
Query: 121 tgtctccagctaattgtgcaccatggcacctctggtctaatacacacatctccagggtgg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 322 tgtctccagctaattgtgcaccatggcgcctctggtctaatacacacatctccagggtgg 263

                                                                       
Query: 181 agggtaggagagaaaggcaccatcagtccatgtgcatacatgctcctgtgcgcccgcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agggtaggagagaaaggcaccatcagtccatgtgcatacatgctcctgtgcgcccgcacg 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)