BAC Information

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BAC

Clone NameMSMg01-460I07
Chromosome17 (Build37)
Map Location 79,130,066 - 79,308,188
singlet/doubletdoublet
Overlap geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream geneCebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460I07.T7 (MSMg01no460_i07.b1)MSMg01-460I07.TJ (MSMg01no460_i07.g1)
ACCAG545857AG545858
length706719
length of high quality
(start - end)
619 (62 - 680)531 (70 - 600)
definitionCHROMAT_FILE: MSMg01no460_i07.b1 PHD_FILE: MSMg01no460_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:47 2005CHROMAT_FILE: MSMg01no460_i07.g1 PHD_FILE: MSMg01no460_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,307,570 - 79,308,188)(79,130,066 - 79,130,595)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATTTCCAATTTACCTAGAAGGCTGGGAGCAGGCGTGCATCGGAGCCT
GGGGACCATTGTGTTATCTGTGGTGGCCATCGATCACACCAGACACTGCT
TGTTTTTCTCAATCTACAGAACCCATCTTTATGGAAGGTGTCATATGTAC
ATCACAAAGAGATTTGATGTAGTTTCATCCAATCCTCCTCCCACTCAGTC
CCCTCCCATCACTGTATAAGACGAGGCTCTTCTATACAGTCCCTTGCTCT
GCATAATGATACAGATTCCTTTATATTTATTAAGAGCTTCAGGCACTATA
GCCTGCTATTCTATAGTCAGCTATTCTAATACTGGCCTTAAGCTACTTCC
CAGATATGTGGCCTATACCTGCCATCTTAGCCTCTCCCTGGCACCTCCTT
CTATGTCCCAATGGCAACTCTCTGGTCCTCTGATTCTTTGGTCTTTCCCC
CCAACCCCCGCCCCTCAGAAGTCCTGCCTTTTCCTTTCCTGTTCATCTAT
TGGCTGTTCAGCTCTTTAATTAACCAATCAGAAGGTGATGGAGAACAATG
TTTTACAAAATACTGAGTCGGGAGAAACTTCATAATATTGACAATGCCAA
GGTCTGACTGCAAATGGATCTGAGTGCAGAAATCAGGATTTGAATACACA
GTGCAN
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAACGGAGACACTGCGGCTGAGTTCAGCTT
TGTGGTAGAGGGTGTGCTTAGCATGTGCCAAGCCCTGGGTTGAATCTGTA
GGAAGAGGACAAAAGAGGAGGAGGGAGAGGTGGCAGAGGAGGTAAAGAAC
CTGAAAAGACTTTTAAAAAAGAAAAGCCTGTCAAAACACCTGGAGACAAA
AGTGACAGAGCTTATCCAAAGCCTACTTCAATCCTGGTCATTTAACCTCT
CTGTGACTTAAAAAGTTTGGAGTTAACTTCCAAAGTTCATTCCCCCTCAA
AGATGGCTCTGTCATTATAGATTTCAGTCAGTAGGAGGTGATTCAAATGA
TAATAGGCTACCGCCTAAAAATAAAATGCTAGCTATCTTCCGAAAGAACA
ATGGAAATTAACAGAAATTATATCTCATATCTATAAAAAGCCATCCATAT
ACTGAATGCCAACAGATGTTGAAAACTGCCAAACTTTATACACACTGTGT
CAGAGAGAGAGACAGAAAGAATAGAAAAAAAACCTAAGCATTTACCTTCG
ATTTTTGTTACATATAGAACCAAAAAAAAAAAAAAATTCTTAAAAATGCT
TCAAAACTGCTAATGCTAGAGCCATAATTTCTATGAATCTGATTCTAATG
GCCTGGAATGAAGCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_i07.b1 MSMg01no460_i07.b1 CHROMAT_FILE:
MSMg01no460_i07.b1 PHD_FILE: MSMg01no460_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:47 2005
         (619 letters)



>mm_chr17_79307457_79308475
          Length = 1019

 Score = 1189 bits (615), Expect = 0.0
 Identities = 618/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacctagaaggctgggagcaggcgtgcatcggagcctggggaccattgtgttatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttacctagaaggctgggagcaggcgtgcatcggagcctggggaccattgtgttatctgt 673

                                                                       
Query: 61  ggtggccatcgatcacaccagacactgcttgtttttctcaatctacagaacccatcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggtggccatcgatcacaccagacactgcttgtttttctcaatctacagaacccatcttta 613

                                                                       
Query: 121 tggaaggtgtcatatgtacatcacaaagagatttgatgtagtttcatccaatcctcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tggaaggtgtcatatgtacatcacaaagagatttgatgtagtttcatccaatcctcctcc 553

                                                                       
Query: 181 cactcagtcccctcccatcactgtataagacgaggctcttctatacagtcccttgctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cactcagtcccctcccatcactgtataagacgaggctcttctatacagtcccttgctctg 493

                                                                       
Query: 241 cataatgatacagattcctttatatttattaagagcttcaggcactatagcctgctattc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cataatgacacagattcctttatatttattaagagcttcaggcactatagcctgctattc 433

                                                                       
Query: 301 tatagtcagctattctaatactggccttaagctacttcccagatatgtggcctatacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatagtcagctattctaatactggccttaagctacttcccagatatgtggcctatacctg 373

                                                                       
Query: 361 ccatcttagcctctccctggcacctccttctatgtcccaatggcaactctctggtcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccatcttagcctctccctggcacctccttctatgtcccaatggcaactctctggtcctct 313

                                                                       
Query: 421 gattctttggtctttccccccaacccccgcccctcagaagtcctgccttttcctttcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gattctttggtctttccccccaacccccgcccctcagaagtcctgccttttcctttcctg 253

                                                                       
Query: 481 ttcatctattggctgttcagctctttaattaaccaatcagaaggtgatggagaacaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttcatctattggctgttcagctctttaattaaccaatcagaaggtgatggagaacaatgt 193

                                                                       
Query: 541 tttacaaaatactgagtcgggagaaacttcataatattgacaatgccaaggtctgactgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttacaaaatactgagtcgggagaaacttcataatattgacaatgccaaggtctgactgc 133

                              
Query: 601 aaatggatctgagtgcaga 619
           |||||||||||||||||||
Sbjct: 132 aaatggatctgagtgcaga 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no460_i07.g1 MSMg01no460_i07.g1 CHROMAT_FILE:
MSMg01no460_i07.g1 PHD_FILE: MSMg01no460_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:47 2005
         (531 letters)



>mm_chr17_79129866_79130796
          Length = 931

 Score = 1025 bits (530), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacggagacactgcggctgagttcagctttgtggtagagggtgtgcttagcatgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacggagacactgcggctgagttcagctttgtggtagagggtgtgcttagcatgtgcc 260

                                                                       
Query: 61  aagccctgggttgaatctgtaggaagaggacaaaagaggaggagggagaggtggcagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccctgggttgaatctgtaggaagaggacaaaagaggaggagggagaggtggcagagg 320

                                                                       
Query: 121 aggtaaagaacctgaaaagacttttaaaaaagaaaagcctgtcaaaacacctggagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtaaagaacctgaaaagacttttaaaaaagaaaagcctgtcaaaacacctggagacaa 380

                                                                       
Query: 181 aagtgacagagcttatccaaagcctacttcaatcctggtcatttaacctctctgtgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgacagagcttatccaaagcctacttcaatcctggtcatttaacctctctgtgactt 440

                                                                       
Query: 241 aaaaagtttggagttaacttccaaagttcattccccctcaaagatggctctgtcattata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagtttggagttaacttccaaagttcattccccctcaaagatggctctgtcattata 500

                                                                       
Query: 301 gatttcagtcagtaggaggtgattcaaatgataataggctaccgcctaaaaataaaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttcagtcagtaggaggtgattcaaatgataataggctaccgcctaaaaataaaatgc 560

                                                                       
Query: 361 tagctatcttccgaaagaacaatggaaattaacagaaattatatctcatatctataaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagctatcttccgaaagaacaatggaaattaacagaaattatatctcatatctataaaaa 620

                                                                       
Query: 421 gccatccatatactgaatgccaacagatgttgaaaactgccaaactttatacacactgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccatccatatactgaatgccaacagatgttgaaaactgccaaactttatacacactgtg 680

                                                             
Query: 481 tcagagagagagacagaaagaatagaaaaaaaacctaagcatttaccttc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagagagagagacagaaagaatagaaaaaaaacctaagcatttaccttc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)