BAC Information

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BAC

Clone NameMSMg01-461I22
Chromosome17 (Build37)
Map Location 9,864,391 - 9,864,757
singlet/doubletsinglet
Overlap genenone
Upstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I22.T7 (MSMg01no461_i22.b1)MSMg01-461I22.TJ (MSMg01no461_i22.g1)
ACCAG546652AG546653
length793765
length of high quality
(start - end)
367 (71 - 437)464 (70 - 533)
definitionCHROMAT_FILE: MSMg01no461_i22.b1 PHD_FILE: MSMg01no461_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:12 2005CHROMAT_FILE: MSMg01no461_i22.g1 PHD_FILE: MSMg01no461_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAA
TTCTATACTTTTCCCTGATCTTAGCCTAGGTTGGTCACTGATCCTTCCTT
TGGTGATCATCAGTTGTAGTACTTTGTGTGTGTAGATTACTTTGTCTATT
TATTCTCTTGGGGACTTCACAGGCTGTAATTTATGGATTGAGTTAGCTCC
ACATGATAGAAGGAAAGCTCTAGAAGAACACATCTTTGAAGACAATGTAT
CTGCATGGACAGCATCTGTAGATCCATTTAGTTCTGATAGATTGTTACCA
ACAGGAGTTTCACAAATTATTTTGTGATTGCATGGAACCAGAGTTTCTGA
AGCACACAACAGGCATACAGGAGATATTGTCTCTGAAAACGCCTGACTGA
TTCTCCATAATTGAGGGCTGTGCTTGTAGCTTAGTTGTAGATGGGGGATG
CCTGTCTAGCATGTACAAGGCCCTGAGTACTTTCTTCCCCCCACAGAAAA
AAGGGGGAGGGGGAGAAAAATGTCCCCCTACACACGCTGATATTGGTTAA
ACAAAAAGGAATATTAACCAAATTAATTTCCTGGCTTTTCCAAACAGTTT
AAAAGTTTTTGGGGAAATTCCACCTTTAATGTAATTTGGCCGCAAAATGG
TTCCTTCCCCCTAAAATCCTTCCTGTTTTTTAAACCCACCCCTTTTTTTT
TTTATTTTGTCACCACATATAGCTTTTTTTCTGTTCGTGGCGTTTTATAA
ACATAATCTTTGTACCATAATATCGACTCTTTTTTTTTCGCCT
GTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACGGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTTAGTCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCCAATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGATGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCAGTTCCTCATATTTTTGGACATAGTACTACCGGAGCATCCTGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCATAAACTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTA
TATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGACTATATGA
AATTCCTAGGCAAATGTTTGGACCTGGTGGGCATCATCCTGATTGAGGTA
ACCCAATCCCCAAAGAACTCCAATGGAATGGAATCCCTGAATAATGGTTT
TTTACCCCCAAACCTATTTTTCCCCAGAATTAAAAAAAAATTTGCACCAC
CCCTGGTACTTTAGAAAAAATTTAAACCCCTCTTGTGGCCCTTTGCTCCC
CTTTTTAAAAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i22.b1 MSMg01no461_i22.b1 CHROMAT_FILE:
MSMg01no461_i22.b1 PHD_FILE: MSMg01no461_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:12 2005
         (367 letters)



>mm_chr17_9864191_9864957
          Length = 767

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcctaggttggtcactgatccttcctttggtgatcatcagttgtagtactttgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttagcctaggttggtcactgatccttcctttggtgatcatcagttgtagtactttgtgtg 508

                                                                       
Query: 61  tgtagattactttgtctatttattctcttggggacttcacaggctgtaatttatggattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 tgtagattactttgtctatttattctcttggggacttcacaggctgtgatttatggattg 448

                                                                       
Query: 121 agttagctccacatgatagaaggaaagctctagaagaacacatctttgaagacaatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agttagctccacatgatagaaggaaagctctagaagaacacatctttgaagacaatgtat 388

                                                                       
Query: 181 ctgcatggacagcatctgtagatccatttagttctgatagattgttaccaacaggagttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 ctgcatggacagcatctgtagatccatttagttctgatagattgttaccaacaggagtgt 328

                                                                       
Query: 241 cacaaattattttgtgattgcatggaaccagagtttctgaagcacacaacaggcatacag 300
           |||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacaaattaaaatgtgatttcatggaaccagagtttctgaagcacacaacaggcatacag 268

                                                                       
Query: 301 gagatattgtctctgaaaacgcctgactgattctccataattgagggctgtgcttgtagc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gagatattgtctctgaaaatgcctgactgattctccataattgagggctgtgcttgtagc 208

                  
Query: 361 ttagttg 367
           |||||||
Sbjct: 207 ttagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)