Query= MSMg01no462_m05.b1 MSMg01no462_m05.b1 CHROMAT_FILE:
MSMg01no462_m05.b1 PHD_FILE: MSMg01no462_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:53 2005
(247 letters)
>mm_chr17_78518391_78519038
Length = 648
Score = 391 bits (202), Expect = e-113
Identities = 235/246 (95%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 1 ttctttgaaga-ataagttcatagaatggccatgactatttcaattttattttgtcacgt 59
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 201 ttctttgaagatataagttcatagaatggccatgactatttcaattttgttttgtcatgt 260
Query: 60 ttcaaggtgtacaatgtttagtcaaagcatcccaaacaggagggacagggcaaaggcctt 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttcaaggtgtacaatgtttagtcaaagcatcccaaacaggagggagagggcaaaggcctt 320
Query: 120 tatgggaataattttccaatagattgctgtagtttagttgatacagagatgagagtgact 179
||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tatggaaataactttccaatagattgctgtagtttagttgatacagagatgaaagtgact 380
Query: 180 cttgtttggatatatgttctaaattacagggtatacattagtgatagtcatttttaaaga 239
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcgtttggatgtatgttctaagctacagggtatacattagtgatagtcatttttaaaga 440
Query: 240 tacatt 245
||||||
Sbjct: 441 tacatt 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no462_m05.g1 MSMg01no462_m05.g1 CHROMAT_FILE:
MSMg01no462_m05.g1 PHD_FILE: MSMg01no462_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:53 2005
(400 letters)
>mm_chr17_78673245_78674044
Length = 800
Score = 696 bits (360), Expect = 0.0
Identities = 390/400 (97%)
Strand = Plus / Minus
Query: 1 tttggacactacagaattcagtaagaacacagagtataaagccaagaggcaaagaaccta 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggacactacagaattcagtaaaaacacagagtataaagccaagaggcaaagaaccta 386
Query: 61 ctacacttgtgcgccccagatctcactgcggtgtaccttatactctgcagactgggaaca 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ctacacttgtgtgccccagatctcactgcggtgtaccttacactctgcagactgggaaca 326
Query: 121 gtctatgatcttgaccttggctgtcacaggggccctcgaccacttgatagatcctgtgat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 gtctatgatcttgaccttggctgtcacaggggccctcggccacttgatagatcctgtgat 266
Query: 181 agcggactagtctgtaaagtcctctgtgtctgtctttcactcattcagttgacaaacatt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcggactagtctgtacagtcctctgtgtctgtctttcactcattcagttgacaaacatt 206
Query: 241 aactgtttttcttgaacacgaaaggagcaaagtccttgctttctgggatttatagctcga 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aactgaatgacttgaacacgaaaggagcaaagtccttgctttctgggatttatagctcga 146
Query: 301 gaggagaggacagaggcattcagacaaacggcttctcagcatagtgccaggtgccaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaggagaggacagaggcattcagacaaacggcttctcagcatagtgccaggtgccaataa 86
Query: 361 aggctctgaagtgtaatcaataatgctagggccctgcctt 400
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 85 aggctctgaagtgtaatcaataatgcaagggccctgcctt 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
