BAC Information

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BAC

Clone NameMSMg01-462P06
Chromosome17 (Build37)
Map Location 69,554,766 - 69,555,140
singlet/doubletsinglet
Overlap geneEpb4.1l3
Upstream geneD930040M24Rik, EG622645
Downstream gene2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P06.T7 (MSMg01no462_p06.b1)MSMg01-462P06.TJ (MSMg01no462_p06.g1)
ACCAG547719AG547720
length867775
length of high quality
(start - end)
79 (42 - 120)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no462_p06.b1 PHD_FILE: MSMg01no462_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:08 2005CHROMAT_FILE: MSMg01no462_p06.g1 PHD_FILE: MSMg01no462_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATTATTCGCGCCGCTATACGACTACTATTTTCAGAGGATCCGCGGAAT
TCTGTTGTATTGCGCTTTTGTTTGTTTTTTTTAGAAAGAACTTAAATTTT
AGGTAGATGGGGGAGAGGGCACGGACATCTTCCCCTCCCCCCCTTTCCCC
GCCCCTTCTCTCCCGTTCTCGCCCCCCCCTTTCCTTCCTCCCTTTCCTTC
CTCCTCCTCTCTTTCTTCCCTCCCCCCTCCCCTTCTCCTTTCTTTTCCCC
TTTTTTCTTCCGCCTCTCCCCCCCTCTCTTCTCCGTCTCCCCCCCCCTCT
TTCTCTTTCCCGCCCCCGCCTTCTCTTTTTTTTCCTTCCCCCCCTTCCCC
TCTCTCCCCTCTCCCCTCTTCTCCCCTCCTCTCTCTCCCTTCCCTCTTTT
TTTTTTTCCTTTCTTCCTCCTTCCTTTTCTTTCCTTCCCCTTTTTCCTTT
CCCTTTCTCTCCTTCTCTCCCTCCTCCCTTCCCTTTCCTTCTTCTCTTCT
TCTCCCTTCTCTCTCCCCTCCTTTCTTTTCTCCCTCTTCTTCTCCCTCTC
CCTTCTCCCTTTCCTTCCTTCTCTTCTTCCCCTCTCTCTTTTCCCTTCTC
TCTCCCCCCTTCCCCTTTCCTCTTCTTTCTTTCCCCCCCTTTTTCCCCCC
CTCCCTTTTTTTTCCCTCCCTTTTTTCCTCCTTCTCCCCCCCTCTCCTTC
CTCCCTCTCTCCCCCTTTCTCCTCCTCCCTCTTCCCCCCTCTTCTCTCCC
CCTCTCTCTCTCCTCCCCTTCTCTCCTCCTCTTTCTCCCTCGCCGTTCCT
TCTTCTTTTCTCTCTCTCTCTCCCTCGCTTCTCTCCCTCTCCTCTCCTCT
CCTCTCCTTTCCTTCTN
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXNATCGCCGNAATCCACCATGTTCACCCTCCCCCACCTCCCC
ACACATACACTCACACAATTTCTTGGTACTTAAGCTGGCTTCCAGGACTA
AGCAGACCAAGAAAAGGTAATATTTGCTTTCAAGATGTGTTTAAACAGCT
TTTAAAATGTGATGGCCGGGTGAGGGGAAGGTTAGCTCACAGTCTTATTC
TGAGTTTGATATTTACATTGCTTAGGGTAGGTAGCTCAGCACATGCCAAG
TTGATATGTCTTCTTCAACATATTGAATAGCTGGCGACTGAGAGAAGGAA
CCCTGCATAAAGAGCGTACATAAAGCAATGATTGGTGTTGGCAATGTCCC
TTTACGGAGATAGTTAAATTCCTAAATGATGGGCGTGCTGCATATGTATG
AGCCAAAGTTGCATAATCCCATATCATAGCAGTACATCTGTCATTTACTT
AAGGAATTGCTCTAGCCCTTTGCTCGTGATATTCTCTTCCTTACTAGGTT
AATTACAATTGTGGCAAGAAATTGTAACAGCTACTTTGTCCTCCAGAGTA
TTTTACCCTACCCGATACCTATTACACCATCTTGTCCCGTGCCGCCTTGC
ATAACTTTCCTCTTAATTGTCTTCTCCCCCGAAATATGTTCTTAAGAACT
TTGTGGCTGCCTCGACTTTATTCTTATGATTCCCTTCCTAATGTTTTGGT
TCTGTGTTAACCCCTCCGGTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p06.g1 MSMg01no462_p06.g1 CHROMAT_FILE:
MSMg01no462_p06.g1 PHD_FILE: MSMg01no462_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:08 2005
         (379 letters)



>mm_chr17_69554566_69555340
          Length = 775

 Score =  667 bits (345), Expect = 0.0
 Identities = 369/379 (97%), Gaps = 4/379 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccatgttcaccctcccccacctccccacacatacactcacacaatttcttggtactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccatgttcaccctcccccacctccccacacatacactcacacaatttcttggtactta 260

                                                                       
Query: 61  agctggcttccaggactaagcagaccaagaaaaggtaatatttgctttcaagatgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctggcttccaggactaagcagaccaagaaaaggtaatatttgctttcaagatgtgttt 320

                                                                       
Query: 121 aaacagcttttaaaatgtgatggccgggtgaggggaaggttagctcacagtcttattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagcttttaaaatgtgatggccgggtgaggggaaggttagctcacagtcttattctg 380

                                                                       
Query: 181 agtttgatatttacattgcttagggtaggtagctcagcacatgccaagttgatatgtctt 240
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 381 agtttgatatttacattgcttagggtag----ctcagcacatgccaagttgatatgtctt 436

                                                                       
Query: 241 cttcaacatattgaatagctggcgactgagagaaggaaccctgcataaagagcgtacata 300
           |||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttcaacagaaggaatagctggtgactgagagaaggaaccctgcataaagagcgtacata 496

                                                                       
Query: 301 aagcaatgattggtgttggcaatgtccctttacggagatagttaaattcctaaatgatgg 360
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 497 aagcaatgattggtgttggcaatgtccctttatggagatagttaaattactaaatgatgg 556

                              
Query: 361 gcgtgctgcatatgtatga 379
           |||||||||||||||||||
Sbjct: 557 gcgtgctgcatatgtatga 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 775
Length adjustment: 9
Effective length of query: 370
Effective length of database: 766
Effective search space:   283420
Effective search space used:   283420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)