BAC Information

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BAC

Clone NameMSMg01-463D19
Chromosome17 (Build37)
Map Location 43,407,914 - 43,408,228
singlet/doubletsinglet
Overlap geneGpr110
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770
Downstream geneGpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463D19.T7 (MSMg01no463_d19.b1)MSMg01-463D19.TJ (MSMg01no463_d19.g1)
ACCAG547936AG547937
length655748
length of high quality
(start - end)
108 (83 - 190)315 (79 - 393)
definitionCHROMAT_FILE: MSMg01no463_d19.b1 PHD_FILE: MSMg01no463_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:34 2005CHROMAT_FILE: MSMg01no463_d19.g1 PHD_FILE: MSMg01no463_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCCCCTANNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXGCGCGGAATTCTTCACTAATTCCCTCTGGCCCTGAGATATTTTTT
TTTTTTTTTTTTTTTTTTTTTTTGGGTAGGAGACTTTTAATGACTGCTTC
TATTTCACTAGGGGCTATAGGTCTCTTTAAATTACTTAGCTGGTCTTGAT
TCAACTATCATAAGTGGTATGTATAGAGAAATCTATGTGAGCTGAAGAGA
TGGCTCAGCAGTTAAGAGTTTGCTGGTCCTCTGGAAGACCTGAATTTGGT
TCTTAAAACCCAGATTGGGTAACTGATAGCTGTCTGCAACTGCAGTTCCC
AGAGATATAATACTCTCTCTTCTAGACACTGGACATGGCACACACACACA
CACACACAAAGTTGAATGCAAATTTAATGGTAGATAACGGTATGTGCACT
TCAGAGTTTGTGGAAAGTGAAAGTTGATTTACTTGGATGGCACCCCAAAA
CCCCCCGGGAAAAGCAATCCTTTGGGGCAAGGGATCCCCCCAGGGTTTAG
GCCTGGGCCTATTGGGGCCAAGGGCTTTTTGGGGGGAAAAATGGGATATA
AAATTTGGGGGTTTAACTTTTGGGGGGTGAAAAAAAACCCTTAATTCCCC
TGGGG
NNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTGTGGCACCATGCTCAG
ATGTAAGTGAAGATTTTTATGGAAAATAAAACCGTGACCTTTTCTAGGCC
TGTGGGGTCATCTTATATTTCCTCGGGGAAGAAATAAGGGGCAACCACTG
TAAAGGACAATGGCTTTTCTGAGAGTCACGAAGGGTGTTCAGTCGGGAGA
AAACCTTCAGATTTATACTGGTCCGTGCAAGGTTCCAATAGACGCATTCA
ATAGACCGCAGTGGAAATAAATTTACTTGTCTCAGACACTTAAGGTGGCA
CAAATTTGTGATCCCAGAACTTGGCAGAGGAGGCAGGAGGATAAGGGATT
CAAAGTCAAAGCCAGCCTGGGTTACACCAGTTTGGGGCCAGCCTGCACTA
CATGAGACCTGTCTGGACCAAAACAACCTAATAAATAAAATCCATTTTAT
CTTCTCAAGCATGGACTTGAGAAACAAAACAACCAACCGGCCGTTTATTT
TTAAAAGGGTCCCCTGGAAGAAGCTTGGCAAAAGGTTAGGGAGCCGAACT
TTCCCGGGCCCCGTAAAAAGGGCCCGGCCCCGGTCCTGAGAAAAAACCCT
TGGGTTTTTCGGGGGAAAAAAAAACTCACCTTTTTGGGCTGGGAAAAAAA
TCTTCCGGCTTCCCCATTTGGTGGAAAAAAAAAACCCCCGTGTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_d19.g1 MSMg01no463_d19.g1 CHROMAT_FILE:
MSMg01no463_d19.g1 PHD_FILE: MSMg01no463_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:34 2005
         (315 letters)



>mm_chr17_43407764_43408478
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctgtggcaccatgctcagatgtaagtgaagatttttatggaaaataaaaccgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caggctgtggcaccatgctcagatgtaagtgaagatttttatggaaaataaaaccgtgac 406

                                                                       
Query: 61  cttttctaggcctgtggggtcatcttatatttcctcggggaagaaataaggggcaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttttctaggcctgtggggtcatcttatatttcctcggggaagaaataaggggcaaccac 346

                                                                       
Query: 121 tgtaaaggacaatggcttttctgagagtcacgaagggtgttcagtcgggagaaaaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtaaaggacaatggcttttctgagagtcacgaagggtgttcagtcgggagaaaaccttc 286

                                                                       
Query: 181 agatttatactggtccgtgcaaggttccaatagacgcattcaatagaccgcagtggaaat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 agatttatactggtccgtgcaaggttccaatagacacattcaatagaccgcagtggaaat 226

                                                                       
Query: 241 aaatttacttgtctcagacacttaaggtggcacaaatttgtgatcccagaacttggcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aaatttacttgtctcagacacttaaggtggcacaaatttgtgatcccagaacttggcaga 166

                          
Query: 301 ggaggcaggaggata 315
           |||||||||||||||
Sbjct: 165 ggaggcaggaggata 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)