BAC Information

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BAC

Clone NameMSMg01-463G12
Chromosome17 (Build37)
Map Location 47,383,596 - 47,383,725
singlet/doubletsinglet
Overlap genenone
Upstream geneRpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463G12.T7 (MSMg01no463_g12.b1)MSMg01-463G12.TJ (MSMg01no463_g12.g1)
ACCAG548066AG548067
length753743
length of high quality
(start - end)
132 (125 - 256)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no463_g12.b1 PHD_FILE: MSMg01no463_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:48 2005CHROMAT_FILE: MSMg01no463_g12.g1 PHD_FILE: MSMg01no463_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCATCATCAT
CGGCGGAANNCNCAGNGGTACCAACACAACCCTGNAACTTGCTNNGCCAC
ACTCATGGATGAACAAGCCAAGTTCACCCTGGGGTTCCTGTCCTCCAAGG
CTCCTCTCTCCTTTCACTGTGTCCTGACATCTTTCTCTGGTCCCGCCCCC
ACTGCCCTCTTCTCGCCATTCTGTCATCAGCAGCACAGAGTTGTTCATTA
AATATATAGTCAGTCAATAGCTGCTAACTTGTTATTGACTGACCAGGGTA
CCATCACGCCAAAGGAGGCCTTTTTTTTTTTATCTGCGAACAGCATTATA
GTGAAACCAATGTGTTCGATCTCCAGTTATTACTCTGTAGATTGCGTCTA
ATAACTTCGTTTCCAATGTTCTGCGCTTGTCTGAGAAACTAGTAAGCTGT
GCTGCTCTATTAAACATACATACATAGGTTCTCTGTGTTCTCATCATTTG
CCTCATAATTGCCAATCATCCTCCTTCAAACCATTTGACTCCCCTCTTCC
TGCCTCTCAATTTCTTGCACTTGCTCTTTATCTTTTCCATTCTACGTCCT
TATTCTTTGTACTTTACCACTGTACAATTACCTAGAGGTTTTCTCTATTT
ACTGTATCTACCTATCTCTTTTATTTACTCTATCCAATCCATCTATTTAT
ACTCAACCTTATATTTTTATCATTCATAATTTATTCATCCCTTTCTTTTC
TAN
NCTTTCCGATGCAGTGGTAGCCTGGAGGCGCCTGGTTCAAACATGAGGNG
ACCTATAGAAGTTACGCGAAATTCAGTGGTAGCCCTGGCTGTCCTGGAAT
TCACTGTGTAGACCATGCTGGCCTCAAACTCAGAGATCCGCCTGCCTCTG
CCTCCCGAGTGCTGGGATTAAAGGCCTGTGCCATAACGCCCGGCACAAGT
TTTCTTTTCACTTTGGTTTTTCAAGAGAGGATGTCTCTCTTTCTGTGTAT
TCCTGGCCATCCTGGAACCCACTCTGAAGACCAGGCTAGCCTCAAACTTG
GAGATCCTCCTGTCTCNGTCNCTCAAGTGCTGGGATTGAAGGCATGTGTC
CCCACCACCTGGCTCAGTTTCTATTTTTTAAATTTTATTTTTGGGATGGA
GAGTCGGCTCAGCGCCAAAGAGCCCTTGTAGAGGTCTTGGGCTCCATTTC
CAGCATCTTTATGGTGGCAAACAACCTCCCACTCCGCCTTGTGCAGTGAA
AACATGTGGTACACAGATATGCACCCAGGCAAACATATATAAAAATTAAT
TTATTTTTATAATTCATTGATATTCTAAATTTAAACACTTCATTCTTTAA
ATTTCCTTCCTCTCCGACGTCCAGATATTAAAATATCCTTAACCCTCTGG
TATTTTTTCTTCCTTGTCTCGACATGTGATCCTTTCGCCCTCTTAACATA
ATTCCTGCCCTTTGACTTAACTTTCGTCATCTCTCCGACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_g12.b1 MSMg01no463_g12.b1 CHROMAT_FILE:
MSMg01no463_g12.b1 PHD_FILE: MSMg01no463_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:48 2005
         (132 letters)



>mm_chr17_47383396_47383927
          Length = 532

 Score =  252 bits (130), Expect = 9e-72
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccctggggttcctgtcctccaaggctcctctctcctttcactgtgtcctgacatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctggggttcctgtcctccaaggctcctctctcctttcactgtgtcctgacatcttt 260

                                                                       
Query: 61  ctctggtcccgcccccactgccctcttctcgccattctgtcatcagcagcacagagttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggtcccgcccccactgccctcttctcgccattctgtcatcagcagcacagagttgt 320

                     
Query: 121 tcattaaata 130
           ||||||||||
Sbjct: 321 tcattaaata 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)